Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SPA3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15354 1003 / 0 SPA3 SPA1-related 3 (.1) AT1G53090 961 / 0 SPA4 SPA1-related 4 (.1.2) AT2G46340 522 / 3e-170 SPA1 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) AT4G11110 403 / 4e-125 SPA2 SPA1-related 2 (.1) AT2G32950 336 / 1e-103 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52250 187 / 3e-52 EFO1, RUP1 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23730 166 / 6e-45 EFO2, RUP2 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 77 / 6e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT1G73720 74 / 2e-13 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT4G29830 64 / 1e-10 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G119500 [exp] 1556 / 0 AT3G15354 982 / 0.0 SPA1-related 3 (.1) Potri.001G094500 [exp] 568 / 0 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.014G095300 [exp] 546 / 2e-179 AT2G46340 846 / 0.0 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) Potri.003G137100 [exp] 543 / 2e-177 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.014G159300 [exp] 356 / 4e-111 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G002700 [exp] 345 / 2e-107 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G021700 [exp] 338 / 9e-107 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G140200 [exp] 177 / 1e-48 AT5G23730 427 / 3e-149 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G143200 [exp] 172 / 3e-47 AT5G23730 395 / 2e-137 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019475 [exp] 1084 / 0 AT3G15354 992 / 0.0 SPA1-related 3 (.1) Lus10043323 [exp] 985 / 0 AT3G15354 906 / 0.0 SPA1-related 3 (.1) Lus10019476 [exp] 679 / 0 AT3G15354 624 / 0.0 SPA1-related 3 (.1) Lus10032358 [exp] 399 / 2e-123 AT4G11110 784 / 0.0 SPA1-related 2 (.1) Lus10029990 [exp] 342 / 1e-105 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10035332 [exp] 342 / 1e-105 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033942 [exp] 308 / 2e-90 AT4G11110 766 / 0.0 SPA1-related 2 (.1) Lus10027454 [exp] 146 / 4e-39 AT5G23730 248 / 2e-81 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005742 [exp] 122 / 1e-30 AT5G52250 226 / 3e-72 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 71 / 1e-12 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.001G399600.15 pacid=42792356 polypeptide=Potri.001G399600.15.p locus=Potri.001G399600 ID=Potri.001G399600.15.v4.1 annot-version=v4.1 ATGCGTTTGTTCTGGCTTACATGCAGCCCAAGGGGGGTAACCATGGAGGGCTCATCTGAGTCTGCTTGGCAGAAGTCTGGTAGTTATAGGGGATTTAATA CTTCAGTAGTCACCAACAGGAATCTAAGATCCGCATCTTACAACTCTGGGTTTAGAAAGGAGACTGATAGGGTTGTTCTGGCTCGTCAAAACCTAAAAAA CCAGGCTGGTACTTTATCTGGGGTTTGTGAGGATGAAGCTGCAGTTGACCATTTTGTCCAAAACATGGAGTGGAACGATGTTAGCTTGAGGCATTGGTTG AACAAACCAGAACGGTCTGTTGATGAATTTGAATGTTTGCACATATTTAGGCAAATAGTCGAAATTGTAAATGTGGCACATTCACAGGGAATTGTTGTTC ACAATGTCCGGCCTTCTTGCTTTGTCATGTCATCATTTAACCATGTCTCCTTCATCGAGTCCGCTTCTTACTCGGATTCTGGGTCTGATTCTTTGGATGA TGGATTGAATAGACAAACTGTGGAGGTTAAAAATGCTTCTTCTTTCTCCCATGACATGTGCCAGCAGAGAAGTAGGTTACAAAGTGAAGATTTTCTACCT GCATCTACTCCAACAAATGCTTTATCGGAAGCCAGTTGCATGCAGTCCAGCTCGCTTTATGCAGCAGATTTACCATTAGGGGAAGAAACAGAAGAAAATA AAGTCCTTGGTACGAGGAACGTTGAACATGAAGAAGAAAGGAAACAACCATTTCCAATGAAGCAAATATTGCTGATGGAGTCCAGTTGGTATACCAGCCC TGAAGAGGTTGCTGGTTCACCAAGCTCTTGTGCTTCAGACATCTACCAATTGGGAGTTCTTCTTTTCGAGCTGTTCAGCCCATTCACTTCAAGGGAAGAC AAGAGCAGAACTATGTCTAGTCTCAGACATCGGGTTCTTCCTCCTCAATTGCTGCTCAAGTGGCCAAAAGAAGCTTCATTTTGCTTATGGTTACTGCACC CTGAGCCAAGTAGTCGGCCAAAAATGGGAGAATTGCTGCAAAGCGAGTTTCTTAATGAACCAAGAGACTATTTGGAAGAGCGTGAAGCAGCAATACAGCT TAGAGAGAGAATAGAGGAGCAGGAATTGTTGCTGGAATTCCTTTTACCAATGCAACAAAGAAAGCAGGATGCAGCTAATAAGTTGCAAGGTACTGTTTCT CTTCTATGTTCTGATATTGAAGAAGTCACAAAGCATCAAACTTTTCTTAAGAAAAAGGGAAGCACATGTAAAGAAAGAGGAGAGGGTGATCATTTAGCAT CAAATCTCCCTCCCCTGAACATTTATGATATTGACGATTCTTCTAGCTTGGGTTCCCGAAAACGATTTTGCTCAGGTCTTCAGATTCTCAACACAGAGGG ATGTGATGATAATCTCAATGAAGGTCGGAACTCAGATACATTTGTAGAATCACAGGAAAGTCCTCTTTTTAGAAGTTCTCGATTGATGAAGAACTTTAAG AAATTAGAGTCAGCATATTTTTTGACAAGATCCAGACCAGTCAGGCCACCAGGGAAACCACCATTTGTTAGAAATTCACCAGTAAGTGGTGATGGGAGAG GTTCCATTGTTGTGACTGAAAGAAGCTCCATAAATAGTTTAGCACTGAAGGATCGGTTTATTAAGGGTAGACAAAGTGGATGGATAAGTCCATTCCTGGA GGGTTTGTGCAAGTATCTATCTTATAGTAAGTTAAAAGTGAAGGCTGACCTGAAGCAAGGGGATTTGTTGAACTCTTCAAACCTAGTCTGCTCTCTTAGT TTTGACCGTGATGGAGAATTTTTCGCTACAGCTGGTGTAAATAAAAAGATAAAAGTATTTGAATGTGACACAATTATAAATGAAGCTCGTGATATCCACT ATCCTGTTGTTGAAATGGTAAGTAGGTCAAAGCTAAGCAGCATATGTTGGAACAGATATATTACAAGCCAAATTGCTTCAAGTAACTTTGAGGGTGTGGT GCAGGTATGGGATGTTACAAGGAGTCAAGTGGTAACAGAAATGAGAGAGCATGAGAGGCGTGTGTGGTCCATTGACTTTTCATCAGCAGATCCAACAATG CTGGCTAGTGGGAGTGATGATGGTTCAGTCAAGCTATGGAGTATCAATCAGGGAGTAAGTATTGGTTCCATCAAAACAAAAGCCAATGTCTGCTCTGTTC AGTTTCCCATGGATTCTAGTCGTTCTATTGCATTTGGTTCAGCAGATCATAGAATTTATTACTATGATCTCCGTAACTCAAAAGTTCCTCTGTGTACATT GATTGGACACAATAAAACTGTGAGTTATGTGAAGTTTGTAGATACAACCAATATTGTTTCTGCTTCCACGGATAACACACTGAAGCTCTGGGATTTGTCA ATGGGCACGTCTAGGGTTATTGATAACCCCCTTCAATCCTTCACAGGCCACATGAATGTAAAGAACTTCGTGGGTTTGTCTGTATCAGATGGTTACATTG CAACTGGCTCGGAAACAAATGAGGTTTTTGTCTATCACAAGGCTTTCCCTATGCCAGTGCTGTCCTTCAAGTTTAACAACACGGACCCGCTTTCTGGCCA TGAAATGGATGACGCTGCACAATTTATTTCTTCTGTCTGTTGGCGTGGCCAGTCATCTACTTTGGTTGCTGCAAATTCTACTGGGAATATCAAAATCTTG GAGATGGTTTGA
AA sequence Show only first row Show all	>Potri.001G399600.15 pacid=42792356 polypeptide=Potri.001G399600.15.p locus=Potri.001G399600 ID=Potri.001G399600.15.v4.1 annot-version=v4.1 MRLFWLTCSPRGVTMEGSSESAWQKSGSYRGFNTSVVTNRNLRSASYNSGFRKETDRVVLARQNLKNQAGTLSGVCEDEAAVDHFVQNMEWNDVSLRHWL NKPERSVDEFECLHIFRQIVEIVNVAHSQGIVVHNVRPSCFVMSSFNHVSFIESASYSDSGSDSLDDGLNRQTVEVKNASSFSHDMCQQRSRLQSEDFLP ASTPTNALSEASCMQSSSLYAADLPLGEETEENKVLGTRNVEHEEERKQPFPMKQILLMESSWYTSPEEVAGSPSSCASDIYQLGVLLFELFSPFTSRED KSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPEPSSRPKMGELLQSEFLNEPRDYLEEREAAIQLRERIEEQELLLEFLLPMQQRKQDAANKLQGTVS LLCSDIEEVTKHQTFLKKKGSTCKERGEGDHLASNLPPLNIYDIDDSSSLGSRKRFCSGLQILNTEGCDDNLNEGRNSDTFVESQESPLFRSSRLMKNFK KLESAYFLTRSRPVRPPGKPPFVRNSPVSGDGRGSIVVTERSSINSLALKDRFIKGRQSGWISPFLEGLCKYLSYSKLKVKADLKQGDLLNSSNLVCSLS FDRDGEFFATAGVNKKIKVFECDTIINEARDIHYPVVEMVSRSKLSSICWNRYITSQIASSNFEGVVQVWDVTRSQVVTEMREHERRVWSIDFSSADPTM LASGSDDGSVKLWSINQGVSIGSIKTKANVCSVQFPMDSSRSIAFGSADHRIYYYDLRNSKVPLCTLIGHNKTVSYVKFVDTTNIVSASTDNTLKLWDLS MGTSRVIDNPLQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSFKFNNTDPLSGHEMDDAAQFISSVCWRGQSSTLVAANSTGNIKIL EMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15354		SPA3	SPA1-related 3 (.1)		Potri.001G399600 [exp]	0	1	Pt-SPA3.1
AT3G17040		HCF107	high chlorophyll fluorescent 1...		Potri.010G145000 [exp]	1.00	0.9676
AT5G21222			protein kinase family protein ...		Potri.018G081700 [exp]	1.41	0.9394
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Potri.013G086800 [exp]	7.81	0.8867
AT4G12060			Double Clp-N motif protein (.1...		Potri.001G115500 [exp]	12.16	0.8990
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Potri.005G164700 [exp]	14.38	0.9340	CRY1.1
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Potri.010G193300 [exp]	21.16	0.9338
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Potri.007G082500 [exp]	28.49	0.9112
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Potri.017G028301 [exp]	29.47	0.9139
AT1G56500			haloacid dehalogenase-like hyd...		Potri.013G007800 [exp]	30.24	0.9280
AT2G45990			unknown protein		Potri.014G086100 [exp]	32.72	0.9050

Compare expression of checked genes

Potri.001G399600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.