Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53050 1004 / 0 Protein kinase superfamily protein (.1) AT1G09600 659 / 0 Protein kinase superfamily protein (.1) AT1G57700 624 / 0 Protein kinase superfamily protein (.1) AT1G71530 608 / 0 Protein kinase superfamily protein (.1.2) AT5G50860 603 / 0 Protein kinase superfamily protein (.1) AT1G54610 601 / 0 Protein kinase superfamily protein (.1.2.3) AT1G03740 587 / 0 Protein kinase superfamily protein (.1.2) AT5G44290 581 / 0 Protein kinase superfamily protein (.1.2.3.4) AT1G18670 565 / 0 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT1G33770 562 / 0 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G119400 [exp] 1359 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.013G130000 [exp] 786 / 0 AT1G53050 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 701 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.003G003700 [exp] 661 / 0 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 657 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 647 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 639 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.013G032200 [exp] 636 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.012G103900 [exp] 635 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025773 [exp] 1154 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 999 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 726 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10031651 [exp] 706 / 0 AT1G53050 645 / 0.0 Protein kinase superfamily protein (.1) Lus10012805 [exp] 662 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10018601 [exp] 643 / 0 AT1G53050 651 / 0.0 Protein kinase superfamily protein (.1) Lus10033975 [exp] 642 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10039836 [exp] 628 / 0 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1) Lus10004144 [exp] 627 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 625 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G399700.1 pacid=42790557 polypeptide=Potri.001G399700.1.p locus=Potri.001G399700 ID=Potri.001G399700.1.v4.1 annot-version=v4.1 ATGGGTTGCATGTGTTGTAAACCCTCTGCAATTGAGGATAGCAAGGAGAGCCCAAGAGAGAGACTTTCAAGTAAGCCCTCGTCTGACTTGAGGGTATCAA GGGCTACCTCTTCAAGGAGAGAGGAGGCATATAGAGCGAAAGATCAATATGATAGTAATGATGGTAGGACAATGTTGATTGACAAGCAAGTGAATGGGTC TCTTAGAGTGCATGGGGTTGAGCATGTTGATAGGAAGAGGGACAAGTCAGAGTATGCAGTTCTTCACCACCCAGGTATGGGCAGCATACCGAAAGCCACT GAAGGGGAGCAGGTTGCAGCTGGGTGGCCTTCCTGGCTAGCTGCTGTGGCTGGAGAGGCAATCAAAGGTTGGTTGCCACGGCGTGCGGATTCATTTGAGA AGCTGGACAAGATTGGCCAGGGAACCTACAGTAATGTTTATAGGGCTCGTGACCTTGATCAGAAGAAGATTGTTGCTTTGAAGAAAGTAAGGTTTGATAA CCTGGAACCTGAGAGTGTTCGCTTCATGGCCAGGGAAATTCACATCTTGCGCAGGCTTGACCATCCTAATGTAATAAAGTTAGAAGGCCTAGTTACATCA AGGATGTCATGCAGCTTGTACCTTGTGTTTGAGTACATGGAGCATGATTTGGCTGGGCTTGCCTCACACCCTGGTCTGAATTTTACAGAAGCCCAGGTGA AATGTTACATGCAACAACTTTTACGAGGACTTGATCACTGTCACAGCCGTGGTGTTCTACACCGTGATATAAAGGGTTCCAACCTATTAATTGACAACAA TGGTATCTTGAAAATTGCAGACTTTGGACTAGCAAGTTTTTATGATCCTGCCCAGGTTCAGCCACTGACAAGCCGAGTAGTGACTCTTTGGTACCGTCCT CCAGAGCTTCTACTTGGAGCTACCTACTATGGGATAGCTGTTGATTTATGGAGTACAGGTTGCATACTTGCGGAATTGTATGCTGGCAAGCCTATTATGC CAGGGAGAACTGAGGTGGAGCAGCTGCATAAAATTTTCAAGCTGTGTGGCTCACCTTCTGAAGATTATTGGAGAAAATCAAAGTTGCCTCATGCGACTAT CTTTAAGCCTCAGCAGCCTTATAGACGCTGTGTTGCAGAAACATTTAAGGAATTCCCAGCACCAGCTTTAGCTCTTATGGAGACCCTGCTCGCCATTGAT CCTGTAGATCGTGGATCTGCAGCTTCTGCTCTGAGGAGTGAGTTCTTTACGACCAAGCCGCTTCCTTGTGATCCTTCAAGTTTGCCTGATTATCCTCCTA GCAAAGAGTTTGATGCAAAAATGCGAGATGAAGAAGCTAGAAGACAAGGAGCAGCAGGAAGCAAGGGCCAGAAACCTGACATGGAAAGAAGAGGGCAAAG AGAATCTCGAGCTGTTCCAGCACCTGATGCCAATGCTGAGCTAGTTTTATCAATGCAGAAAAGACATGGTCGTCCAAATTCCAAGAGCCGGAGTGAGAAG TTTAATCCCCATCCTGAGGAAGTTGCTTCTGGCTTTCCAATTGATCCCCCTAGACCATCACAAGCTGCAGAATCAAACATGGATCCTCAGGGTCATCAGC ATAAGAGAGCCTCACATTCTGGGCCACTGTCTCACCGTTCTGGATGGGCAAAGGCTGGCAGAAACCCCGATGATGCTCCTAAGATTTACACGGGGGCTGA CCTGTCAACAATTTCAAGCTTAGAGGCGGCGCGGAGGAGTTTATTATCTGAAGATCACAGAGAAAGGTCTGGCCTATCACAACCGGAAGTTCCAAAACTA ATGGCACGGTTTCCAGGATCCTTCAAGGAAACCTCAGAATCCTTTGCCCAACAGGATCCACAGCGTCTGTCACAGGGTGTTGCAGGTTCCCACCAAAAGG AAGATGGGAGAAATAACAGTAAAGATCCTGTCCTTCTTGGCTATGGGTCAAAGGCTCACAAAATCCACTATTCTGGTCCATTGATAGTTCCATCGGGGAA CATGGATCAGATGCTGAAGGATCATGATCGCCAGATCCAAGAAGCTGTTAGACGAGCACGCTTTGACAAGGCAAGGGTTAGAAAAGTCCAGGCTGAAAGC TACCAAATATCAGCCAATTCATTATTTGTTTCAGGTCGATGA
AA sequence Show only first row Show all	>Potri.001G399700.1 pacid=42790557 polypeptide=Potri.001G399700.1.p locus=Potri.001G399700 ID=Potri.001G399700.1.v4.1 annot-version=v4.1 MGCMCCKPSAIEDSKESPRERLSSKPSSDLRVSRATSSRREEAYRAKDQYDSNDGRTMLIDKQVNGSLRVHGVEHVDRKRDKSEYAVLHHPGMGSIPKAT EGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTS RMSCSLYLVFEYMEHDLAGLASHPGLNFTEAQVKCYMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFYDPAQVQPLTSRVVTLWYRP PELLLGATYYGIAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKEFPAPALALMETLLAID PVDRGSAASALRSEFFTTKPLPCDPSSLPDYPPSKEFDAKMRDEEARRQGAAGSKGQKPDMERRGQRESRAVPAPDANAELVLSMQKRHGRPNSKSRSEK FNPHPEEVASGFPIDPPRPSQAAESNMDPQGHQHKRASHSGPLSHRSGWAKAGRNPDDAPKIYTGADLSTISSLEAARRSLLSEDHRERSGLSQPEVPKL MARFPGSFKETSESFAQQDPQRLSQGVAGSHQKEDGRNNSKDPVLLGYGSKAHKIHYSGPLIVPSGNMDQMLKDHDRQIQEAVRRARFDKARVRKVQAES YQISANSLFVSGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53050			Protein kinase superfamily pro...		Potri.001G399700 [exp]	0	1
AT1G53050			Protein kinase superfamily pro...		Potri.011G119400 [exp]	5.74	0.6957
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Potri.011G090200 [exp]	6.32	0.6528
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Potri.010G039900 [exp]	19.62	0.6261	ALA3.3
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.001G443200 [exp]	20.19	0.6914	MOR2,Pt-MOR1.2
AT3G22790			Kinase interacting (KIP1-like)...		Potri.010G083300 [exp]	29.94	0.6826
AT5G13560			unknown protein		Potri.008G048100 [exp]	32.40	0.5050
AT3G22790			Kinase interacting (KIP1-like)...		Potri.008G156200 [exp]	42.66	0.6015
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Potri.010G052600 [exp]	53.57	0.6151
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Potri.010G227200 [exp]	65.54	0.5876
AT2G38440		ITB1, DIS3, SCA...	IRREGULAR TRICHOME BRANCH1, S...		Potri.016G129000 [exp]	74.29	0.4960

Compare expression of checked genes

Potri.001G399700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.