Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53040 573 / 0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) AT1G28240 521 / 0 Protein of unknown function (DUF616) (.1) AT2G02910 265 / 9e-83 Protein of unknown function (DUF616) (.1) AT4G09630 270 / 8e-82 Protein of unknown function (DUF616) (.1) AT1G34550 263 / 5e-79 EMB2756 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) AT4G38500 251 / 6e-77 Protein of unknown function (DUF616) (.1) AT5G42660 216 / 5e-64 Protein of unknown function (DUF616) (.1) AT5G46220 176 / 3e-49 Protein of unknown function (DUF616) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G119300 [exp] 850 / 0 AT1G53040 588 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.011G053000 [exp] 535 / 0 AT1G28240 775 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G044100 [exp] 531 / 0 AT1G28240 779 / 0.0 Protein of unknown function (DUF616) (.1) Potri.010G094000 [exp] 280 / 1e-88 AT2G02910 565 / 0.0 Protein of unknown function (DUF616) (.1) Potri.009G138000 [exp] 276 / 2e-86 AT4G38500 725 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G177600 [exp] 262 / 6e-81 AT4G38500 750 / 0.0 Protein of unknown function (DUF616) (.1) Potri.019G084100 [exp] 264 / 7e-80 AT1G34550 707 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.013G113700 [exp] 259 / 4e-78 AT1G34550 708 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.002G149900 [exp] 206 / 7e-60 AT5G42660 633 / 0.0 Protein of unknown function (DUF616) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001446 [exp] 512 / 8e-177 AT1G28240 706 / 0.0 Protein of unknown function (DUF616) (.1) Lus10011175 [exp] 494 / 4e-170 AT1G28240 730 / 0.0 Protein of unknown function (DUF616) (.1) Lus10015438 [exp] 469 / 2e-160 AT1G28240 698 / 0.0 Protein of unknown function (DUF616) (.1) Lus10036741 [exp] 278 / 2e-87 AT2G02910 545 / 0.0 Protein of unknown function (DUF616) (.1) Lus10037186 [exp] 281 / 6e-87 AT2G02910 546 / 0.0 Protein of unknown function (DUF616) (.1) Lus10025082 [exp] 271 / 2e-84 AT4G38500 764 / 0.0 Protein of unknown function (DUF616) (.1) Lus10024001 [exp] 270 / 4e-84 AT4G38500 771 / 0.0 Protein of unknown function (DUF616) (.1) Lus10028702 [exp] 256 / 4e-77 AT1G34550 750 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10009419 [exp] 256 / 4e-77 AT1G34550 753 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10016294 [exp] 213 / 1e-62 AT5G42660 603 / 0.0 Protein of unknown function (DUF616) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04765 [poplar] [flax] DUF616 Protein of unknown function (DUF616)
Representative CDS sequence Show only first row Show all	>Potri.001G399800.3 pacid=42790031 polypeptide=Potri.001G399800.3.p locus=Potri.001G399800 ID=Potri.001G399800.3.v4.1 annot-version=v4.1 ATGAATGGAGGGTCATTCGGTCAAAGGGGGAGTTATGGATCATTGCCTTGCTACGGAAAATTATCAAATATTGCACGAAAACAATCTTCGAAAATGCCGC CAGTGAGTTCAAGGGACAAGGAGCGGGTTCTCCTGGTTGTTTGCCGGTGCTTGGGGCGTAGAAGAGTTGCAATGTTGCTCTTGGTTGCACTTGCTCTCCT AGTTTTCATCTGGGGTTCCCTTACAGTTAGCAAAGAAACCACAAGTCCAACTGTTAGACCAATGGATAGTATACATTTTGACAACAGTGATATAATAAGC CATCCTTCTGTTGCCTGTCGTTCTAGAGCTAATAGCATATTGGACCATCCATGCCACAAGTTTGCTCTCCCTCCTCCCCCTCCTTCTGGTGGACGACGGT TTGGACCACGCCCTTGTCCAGTATGTTACATTTCTGCAGAGCAAGCTAGAGCTAGCATTCCATGCTCCTCATCTGCATCACCAGTGCTCCGCAACTTAAC ATACGTTGTTGATGAAAACCCAATTAAAATTGAATCACATGGAGGTTCAGAATTTGGTGGATATCCTTCTCTAAAGCAGAGGAATGAATCTTTTGATATA CAAGAGTCGATGACAGTGCACTGTGGATTTGTTAAAGGAAATAGACCTGGCCGCCAGACTGGATTTGATATTGATGAAGCTGACCTGAAGAAATTGGAAG AGTTTCACGAGGTCATTGTTGCATCAGCCATATTTGGGAACTATGACATAATACAACAGCCCAAGAACGTTAGTGAAGCAGCTAGGAAAAATGTTCCTTT TTATATGTTTATTGACGAAGAGACAGAAACATATTTGAAGAATTCCAGCGCCCTAGATAGCAATATGAGGATCGGACTGTGGAGGATTATTGTCGTCCAT AACATCCCCTACACTGATGCAAGACGCAATGGAAAGGTTCCAAAGCTTTTATTGCACAGGCTCTTGCCTAATGTTAGGTATTCCATATGGATAGATGGAA AGCTCCAGCTTGTTGTGGATCCATATCAAGTTCTTGAGAGATTCTTGTGGCAGCAAAATGCCAGTTTTGCAATCTCAAGACACTATCATCGCTTTGATGT GTTTGAAGAGGCTGAAGCTAACAAAGCTGCAGGAAAGTGTGACAATTCATCCATTGATTACCAGATTGAATTTTATAAAAAAGAGGGTTTATCGCCATAT TCCAAGGCTAAGCTTCCAATAACCAGTGATGTTCCTGAAGGTTGTGTTATCATAAGGGAACATATTCCCATCACAAATCTGTTTACCTGCCTGTGGTTCA ATGAAGTTGATCGGTTTACTGCCAGAGATCAGTTAAGCTTCTCCACTGTGAGGGATAAAATAATGGCTAAAGTTGATTGGAGCATCAATATGTTTTTGGA TTGTGAGAGGCGTAATTTTGTGATTCAGGCTTACCACAAAGATTTATTGGACCACATGCCACCTCCAGTTGCTCATGTTATTCGACATCCACCACCATTA CATCGTGATAGTTCAGCTGGGAGAAACCCAAGTAAAAATTCAAGGCGTGGAAGAGATAGGAGATCTGGTTCAAGGCAACACCGCAAGGCTGCTGCGGGTA ACAGGGAGAAGCAAACCTTTTTGTAG
AA sequence Show only first row Show all	>Potri.001G399800.3 pacid=42790031 polypeptide=Potri.001G399800.3.p locus=Potri.001G399800 ID=Potri.001G399800.3.v4.1 annot-version=v4.1 MNGGSFGQRGSYGSLPCYGKLSNIARKQSSKMPPVSSRDKERVLLVVCRCLGRRRVAMLLLVALALLVFIWGSLTVSKETTSPTVRPMDSIHFDNSDIIS HPSVACRSRANSILDHPCHKFALPPPPPSGGRRFGPRPCPVCYISAEQARASIPCSSSASPVLRNLTYVVDENPIKIESHGGSEFGGYPSLKQRNESFDI QESMTVHCGFVKGNRPGRQTGFDIDEADLKKLEEFHEVIVASAIFGNYDIIQQPKNVSEAARKNVPFYMFIDEETETYLKNSSALDSNMRIGLWRIIVVH NIPYTDARRNGKVPKLLLHRLLPNVRYSIWIDGKLQLVVDPYQVLERFLWQQNASFAISRHYHRFDVFEEAEANKAAGKCDNSSIDYQIEFYKKEGLSPY SKAKLPITSDVPEGCVIIREHIPITNLFTCLWFNEVDRFTARDQLSFSTVRDKIMAKVDWSINMFLDCERRNFVIQAYHKDLLDHMPPPVAHVIRHPPPL HRDSSAGRNPSKNSRRGRDRRSGSRQHRKAAAGNREKQTFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53040			Protein of unknown function (D...		Potri.001G399800 [exp]	0	1
AT5G61970			signal recognition particle-re...		Potri.012G106200 [exp]	6.63	0.8999
AT2G38580			Mitochondrial ATP synthase D c...		Potri.016G139000 [exp]	7.41	0.8997
AT3G16200			unknown protein		Potri.001G186200 [exp]	8.36	0.8937
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.003G085200 [exp]	11.44	0.9123	Pt-NPSN11.1
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Potri.003G173200 [exp]	11.57	0.8654	ASY1.1
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.001G149200 [exp]	14.79	0.9067
AT1G14020			O-fucosyltransferase family pr...		Potri.008G090600 [exp]	14.89	0.9080
AT3G22290			Endoplasmic reticulum vesicle ...		Potri.006G023900 [exp]	27.00	0.8931
AT2G19950		GC1	golgin candidate 1 (.1.2)		Potri.018G086600 [exp]	27.92	0.8844
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Potri.013G113700 [exp]	28.24	0.8772

Compare expression of checked genes

Potri.001G399800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.