Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53035 182 / 6e-60 unknown protein AT3G15358 178 / 1e-58 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G119200 [exp] 238 / 2e-82 AT1G53035 172 / 4e-56 unknown protein Potri.013G130100 [exp] 191 / 2e-63 AT1G53035 169 / 9e-55 unknown protein Potri.011G052900 [exp] 168 / 1e-54 AT3G15358 159 / 7e-51 unknown protein Potri.004G044000 [exp] 166 / 7e-54 AT1G53035 182 / 4e-60 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039835 [exp] 166 / 1e-53 AT1G53035 172 / 7e-56 unknown protein Lus10011176 [exp] 166 / 3e-53 AT3G15358 191 / 1e-63 unknown protein Lus10015439 [exp] 165 / 5e-53 AT3G15358 190 / 3e-63 unknown protein Lus10018600 [exp] 155 / 2e-49 AT1G53035 166 / 1e-53 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G399900.1 pacid=42792271 polypeptide=Potri.001G399900.1.p locus=Potri.001G399900 ID=Potri.001G399900.1.v4.1 annot-version=v4.1 ATGGGATCCTCTGGCTTCTTTCTGATATGTATGCTTCATTCTGTGATGGCTCTAACTTGTGGAGCTTTGATGATGTTTTACACAAATGAGGCCACTGTGT TTGGTCATGGCATTGAAATAGCTACAAAGCTTAAAGGTTCAACACCACATGACCAACTCCTGGTCCAAACCTCTGATTCCTTTTCTGGGTTGCTATTGTT TGCCATTGGGTTCCTTTTGTTCATGGTGGCATTTGTTAAGGACAGAGAGTTCCAGAGTTTCTTTGCTAAAGGTTGTGTCTTGCTGCATGTTTCAATGGCT TTCTGGAGGATTTACTTTGAGAGGAAGCTTGAAGATCTGGCTCGTGATTTGCCTAGACTAGTTGTTGGTGACATTGCATTGGCTCTTTCTTGGGTTTTCT TTCTTGTTTATTCTTGGAGAGAGAAGTATGATTAG
AA sequence Show only first row Show all	>Potri.001G399900.1 pacid=42792271 polypeptide=Potri.001G399900.1.p locus=Potri.001G399900 ID=Potri.001G399900.1.v4.1 annot-version=v4.1 MGSSGFFLICMLHSVMALTCGALMMFYTNEATVFGHGIEIATKLKGSTPHDQLLVQTSDSFSGLLLFAIGFLLFMVAFVKDREFQSFFAKGCVLLHVSMA FWRIYFERKLEDLARDLPRLVVGDIALALSWVFFLVYSWREKYD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53035			unknown protein		Potri.001G399900 [exp]	0	1
AT5G66160		JR700, ATRMR1	ARABIDOPSIS THALIANA RECEPTOR ...		Potri.005G111100 [exp]	1.73	0.9604
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Potri.001G055201 [exp]	3.46	0.9473
AT5G13500			unknown protein		Potri.001G028100 [exp]	6.92	0.9223
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.004G093500 [exp]	7.48	0.9364
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.018G119500 [exp]	7.74	0.9268
AT4G32140			EamA-like transporter family (...		Potri.018G024700 [exp]	10.72	0.8921
					Potri.007G088800 [exp]	13.41	0.9187
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.005G093800 [exp]	14.24	0.8818
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.014G080900 [exp]	14.49	0.9115
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Potri.012G130500 [exp]	16.43	0.8834	Pt-ATKEA5.1

Compare expression of checked genes

Potri.001G399900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.