Plant FIBer expression Database

Potri.001G400401 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G400401.1 pacid=42788171 polypeptide=Potri.001G400401.1.p locus=Potri.001G400401 ID=Potri.001G400401.1.v4.1 annot-version=v4.1
ATGGCAACCCCAGCGACAAGGATGATGCTGTTCAAGAACGGCAAGTCGTTCCCTCTCCATCTCCTACGCGGCTCTCTTTTAAATGGGTCCAATAACATCA
CCAGCCAGTTCATGATTTCTGACCCTGCACTATTCCAACCACAGCAAAAGCCCATCTTCAATTTACATGGGGGTCAGTCTAATGCTGGTCTTGTGAGTGA
CATTAACGGGGCTTTGAATTGGAGATTTGGTCGGTTCGGAGAGATGGGTCGTGTGGAGGCACGTGGGAAGAGCGAGAGAGTGATCAGTGATGAGGATGAA
GAAGATGATGAGGACGTTGATGATGATGATGAGGAGATTGAGGATTTCGATGAAGATGTGGAGTATGAGGATGGAGGTGATTTTGATGACGACGACGACG
ACGAAGACGATAGGAAATGA
AA sequence
>Potri.001G400401.1 pacid=42788171 polypeptide=Potri.001G400401.1.p locus=Potri.001G400401 ID=Potri.001G400401.1.v4.1 annot-version=v4.1
MATPATRMMLFKNGKSFPLHLLRGSLLNGSNNITSQFMISDPALFQPQQKPIFNLHGGQSNAGLVSDINGALNWRFGRFGEMGRVEARGKSERVISDEDE
EDDEDVDDDDEEIEDFDEDVEYEDGGDFDDDDDDEDDRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G400401
[exp]
0 1
AT4G16660 heat shock protein 70 (Hsp 70)... Potri.006G022100
[exp]
1.41 0.8787
AT3G23990 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat... Potri.003G173900
[exp]
3.46 0.8428
AT4G29520 unknown protein Potri.018G067300
[exp]
3.46 0.8651
AT4G10040 CYTC-2 cytochrome c-2 (.1) Potri.013G101601
[exp]
3.87 0.8384
AT5G03160 ATP58IPK homolog of mamallian P58IPK (.... Potri.016G088600
[exp]
4.89 0.8481
AT2G19385 zinc ion binding (.1) Potri.006G146200
[exp]
5.29 0.7978
AT1G09780 iPGAM1 2,3-biphosphoglycerate-indepen... Potri.016G142900
[exp]
5.91 0.8313 APGM.2
AT3G60800 DHHC-type zinc finger family p... Potri.002G147300
[exp]
8.00 0.8283
AT1G27330 Ribosome associated membrane p... Potri.001G057300
[exp]
11.09 0.7481
AT2G47580 U1A spliceosomal protein U1A (.1) Potri.002G203600
[exp]
12.00 0.7868

Potri.001G400401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.