Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PSCLRR52.54
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45616 463 / 2e-148 AtRLP6 receptor like protein 6 (.1) AT1G47890 451 / 1e-143 AtRLP7 receptor like protein 7 (.1) AT2G15080 443 / 7e-141 AtRLP19 receptor like protein 19 (.1.2) AT3G05660 436 / 3e-139 AtRLP33 receptor like protein 33 (.1) AT2G32680 432 / 1e-137 AtRLP23 receptor like protein 23 (.1) AT3G11010 424 / 2e-134 AtRLP34 receptor like protein 34 (.1) AT3G11080 420 / 2e-132 AtRLP35 receptor like protein 35 (.1) AT3G05650 417 / 4e-132 AtRLP32 receptor like protein 32 (.1) AT4G13920 417 / 5e-132 AtRLP50 receptor like protein 50 (.1) AT3G25010 415 / 4e-131 AtRLP41 receptor like protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G127101 [exp] 660 / 0 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.016G127000 [exp] 650 / 0 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.016G126900 [exp] 627 / 0 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.001G389100 [exp] 508 / 1e-165 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.011G054500 [exp] 458 / 9e-147 AT5G27060 352 / 6e-106 receptor like protein 53 (.1) Potri.011G055000 [exp] 446 / 7e-143 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.012G028101 [exp] 445 / 3e-141 AT3G11080 400 / 1e-123 receptor like protein 35 (.1) Potri.012G009200 [exp] 441 / 1e-139 AT1G45616 386 / 7e-118 receptor like protein 6 (.1) Potri.012G007932 [exp] 441 / 1e-139 AT1G45616 370 / 6e-112 receptor like protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003389 [exp] 387 / 4e-119 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10026415 [exp] 363 / 6e-110 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10006825 [exp] 351 / 2e-105 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10042239 [exp] 351 / 3e-105 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10014910 [exp] 344 / 2e-104 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10032335 [exp] 331 / 7e-100 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10024721 [exp] 324 / 4e-97 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10003387 [exp] 319 / 8e-94 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10004313 [exp] 308 / 3e-92 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10016402 [exp] 306 / 3e-92 AT1G47890 313 / 4e-94 receptor like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G400500.1 pacid=42787850 polypeptide=Potri.001G400500.1.p locus=Potri.001G400500 ID=Potri.001G400500.1.v4.1 annot-version=v4.1 ATGCAAAGCTTTTCCATCAGCAACAACGCTTCCATTAGTTCTTACGCTTATCCAAAGACTGCATCATGGAAGATCAGAGGAGAAAGCAGTGATTGTTGCT TATGGGATGGCGTCGAGTGTGATGAGGACACTGGCTATGTTATTGGCCTTGACCTCGGAGGTAGTTCTCTCCATGGTTCTATCAACTCCACAAGCAGCCT TTTTCAACTTGTTCACCTTCGAAGGCTTAACCTGGGGGGTAATGACTTCAATTATTCTCAAGTTCCATCTCGAATTGCCCTTCTCTCAAGTCTAACATAC CTCAACCTTTCCAATTCTATGTTCTACGGCGAAATTCCCTTAGAAATCACAGAATTGTCTCACTTGACTTCTCTTGATCTTGGTCGAAATGTTGACTCAT CTGCAAGAAACTTGTTAGAACTCGGAAGCTTCGACTTGAGAAGGCTAGCTCAAAACTTCACCGGGCTTGAGCAACTTGATCTCAGCTCGGTTAACATTTC TTCTACCGTGCCTGATGCCCTCGCAAATTTGTCTTCATTGACATTTCTCAATCTCGAGGACTGCAATTTACAGGGTCTAATTCCATCCTCCTTCGGTGAT CTCACCAAACTAGGCTATCTAAATCTTGGACACAACAATTTTTCAGGTCAGGTTCCTCTTTCGTTGGCAAACCTAACCCAACTTGAAGTGTTATCTTTGT CTCAAAACAGTTTCATCTCCCCAGGTTTGTCTTGGCTAGGAAACCTAAACAAAATTAGAGCTTTACATCTTTCAGACATCAATTTAGTTGGTGAAATCCC TTTATCTCTTAGGAACATGACCCGAATTAGTCAATTACATCTCTCCAATAATCGATTAACAGGGAAAATTCCATTATGGATCTCGAACCTTACCCAGCTC ACTCTCGTGCATCTTAGACACAATGAGTTGCAAGGTCCAATTCCAGAGTCTATGTCCAAACTTGTGAATCTAGAAGAGCTCAAATTGGAGTACAACCACT TGAGTGGCACTATAGAATTCAGCATGTTTGCTAGTCTCAAACACCTAACAATGCTCCAAATACGCCGTAACAATTTGACTGTGCTCACTAATATCAGTGA TAACACTACACTTCCAAAGTTTAAGTATTTGGCATTAGGTGACTGCAACTTAAGTGAGTTTCCAGATTTCCTCAGGAGCCAAGATGAGTTGATCTACTTG CATCTAGGTCGCAACAGGATTCAAGGCCAAATACCGAAATGGCTAGGGGACATAGGTCACAAAACTCTCTCGATTTTGATTCTCCGAAACAATCTTTTCA GTGGCTTTGAGCAATCATGGGAGCTTTCTCTTTTGACGAAGCTACAGTGGCTAGAACTCGATTCTAACAAGCTTGAAGGTCAACTCCCGATTCCACCACC TTCCCTCATCGGTTATAGTATTTCAAATAACTCTCTGACAGGAGAAATTTTACCATCTCTGTGTAATTTGCGATCTCTTGGTTTCCTTGATTTGTCTTAC AACAAATTGAGTGGCATGTTTCCAAACTGCTTAGGCGACTTCAGTGATTCGCTGCTTGTATTGAATCTATCAAACAATTTCTTCCATGGAAGAATTCCTC AAGCGTTCAGAGATGAAAGCAACTTGAGAATGATTGATCTAAGTCACAATCAACTGGAGGGTCAGCTGCCAAGATCATTAACAAATTGCAGGATGATGGA GATTTTGGATTTGAGTTACAATAGAATTAGCGACAAATTCCCATTTTGGTTGGCAAACCTTCCTGAGCTGCAGGTACTCATTTTGCGATCTAACCAATTC TTTGGATCAATAAAAAGCCCTGGTGCCATGTTAGAGTTTCGCAAGTTGCAAATCATTGACCTCTCCTACAACAATTTTACGGGTATCTTGCCATCAGAGT TCTTTCAGACCCTGAGAAGTATGAGATTCTCTGATCTTAAGGAGTTCACGTATATGCAGACAATCCATACTTTCCAGTTGCCCGTTTATTCCAGGGATTT TACTTACAGATACGAAATTAACTTGGCAAACAAAGGTGTGTATATGAAATATTGGCAGATCCCAAATGTGATTGCAGCCATTGACCTCTCAAGCAATGCA TTCCAAGGGGATATTCCACAATCCATTGGGACACTTGAGAAGGTTAATGCGCTTAACCTTTCAAATAACCATCTCTCAGGTGACATCCCGTCAGTGTTGG GGAACCTCGCAAATCTTGAATCATTAGACCTTTCACAAAACATGCTCTCTGGAGAGATCCCTCAGTATTTGACGCAGCTCACATTCCTTGCATACTTCAA TGTCTCTCATAATCAATTGGAGGGTCCTATACCACAAGGAAAACAATTTAATACTTTCGATAACAGTTCATACGAAGGTAACTCAGGACTGTACATGAAA CATTTGCCAAAGAAATCCGAATGTTCTGAACCTCCACAGCATCCAAACTTGCCAAAACATCAAGGCTTCAATAATATTCTTCCAAAAGATATTGAATGGA TAGCAGTTGTGATCGGATATGGAAGTGGACTTGTGGTAGGAGTGGTTGTTGGATTGAGAGTTTCCGCAAGAATACCTGAATGGTTTGTGAAGACGTTTGG AAGGACGCAAGGCAACCGAAGGAGAAGAGAGGTTAGGGGCGTGCGCCGTTGA
AA sequence Show only first row Show all	>Potri.001G400500.1 pacid=42787850 polypeptide=Potri.001G400500.1.p locus=Potri.001G400500 ID=Potri.001G400500.1.v4.1 annot-version=v4.1 MQSFSISNNASISSYAYPKTASWKIRGESSDCCLWDGVECDEDTGYVIGLDLGGSSLHGSINSTSSLFQLVHLRRLNLGGNDFNYSQVPSRIALLSSLTY LNLSNSMFYGEIPLEITELSHLTSLDLGRNVDSSARNLLELGSFDLRRLAQNFTGLEQLDLSSVNISSTVPDALANLSSLTFLNLEDCNLQGLIPSSFGD LTKLGYLNLGHNNFSGQVPLSLANLTQLEVLSLSQNSFISPGLSWLGNLNKIRALHLSDINLVGEIPLSLRNMTRISQLHLSNNRLTGKIPLWISNLTQL TLVHLRHNELQGPIPESMSKLVNLEELKLEYNHLSGTIEFSMFASLKHLTMLQIRRNNLTVLTNISDNTTLPKFKYLALGDCNLSEFPDFLRSQDELIYL HLGRNRIQGQIPKWLGDIGHKTLSILILRNNLFSGFEQSWELSLLTKLQWLELDSNKLEGQLPIPPPSLIGYSISNNSLTGEILPSLCNLRSLGFLDLSY NKLSGMFPNCLGDFSDSLLVLNLSNNFFHGRIPQAFRDESNLRMIDLSHNQLEGQLPRSLTNCRMMEILDLSYNRISDKFPFWLANLPELQVLILRSNQF FGSIKSPGAMLEFRKLQIIDLSYNNFTGILPSEFFQTLRSMRFSDLKEFTYMQTIHTFQLPVYSRDFTYRYEINLANKGVYMKYWQIPNVIAAIDLSSNA FQGDIPQSIGTLEKVNALNLSNNHLSGDIPSVLGNLANLESLDLSQNMLSGEIPQYLTQLTFLAYFNVSHNQLEGPIPQGKQFNTFDNSSYEGNSGLYMK HLPKKSECSEPPQHPNLPKHQGFNNILPKDIEWIAVVIGYGSGLVVGVVVGLRVSARIPEWFVKTFGRTQGNRRRREVRGVRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.001G400500 [exp]	0	1	PSCLRR52.54
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.005G037201 [exp]	15.49	0.7651
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.017G018700 [exp]	29.89	0.7290
					Potri.009G048602 [exp]	47.49	0.6834
					Potri.003G163151 [exp]	98.83	0.6913
AT1G20225			Thioredoxin superfamily protei...		Potri.002G017500 [exp]	113.36	0.6734
					Potri.007G036901 [exp]	127.37	0.6768

Compare expression of checked genes

Potri.001G400500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.