Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53770 504 / 4e-175 Nucleotidyltransferase family protein (.1) AT4G00060 96 / 2e-20 MEE44 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) AT2G45620 84 / 8e-17 Nucleotidyltransferase family protein (.1) AT2G39740 68 / 8e-12 HESO1 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) AT3G45750 56 / 5e-08 Nucleotidyltransferase family protein (.1.2) AT3G51620 50 / 3e-06 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G45760 45 / 0.0002 Nucleotidyltransferase family protein (.1.2) AT1G17980 44 / 0.0002 PAPS1 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) AT2G25850 43 / 0.0006 PAPS2 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066000 [exp] 88 / 5e-18 AT4G00060 1491 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Potri.014G073300 [exp] 79 / 5e-15 AT2G45620 575 / 0.0 Nucleotidyltransferase family protein (.1) Potri.002G151000 [exp] 77 / 2e-14 AT2G45620 629 / 0.0 Nucleotidyltransferase family protein (.1) Potri.010G199500 [exp] 60 / 3e-09 AT2G39740 446 / 3e-153 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Potri.019G056800 [exp] 44 / 0.0002 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.015G043200 [exp] 44 / 0.0004 AT1G17980 871 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008574 [exp] 592 / 0 AT5G53770 552 / 0.0 Nucleotidyltransferase family protein (.1) Lus10032691 [exp] 509 / 8e-176 AT5G53770 479 / 3e-164 Nucleotidyltransferase family protein (.1) Lus10015886 [exp] 81 / 9e-16 AT4G00060 669 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10015854 [exp] 78 / 9e-15 AT2G45620 661 / 0.0 Nucleotidyltransferase family protein (.1) Lus10009309 [exp] 72 / 7e-13 AT2G45620 639 / 0.0 Nucleotidyltransferase family protein (.1) Lus10009310 [exp] 70 / 1e-12 AT2G45620 557 / 0.0 Nucleotidyltransferase family protein (.1) Lus10009279 [exp] 70 / 3e-12 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10030154 [exp] 69 / 3e-12 AT2G39740 396 / 7e-134 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Lus10001012 [exp] 67 / 2e-11 AT2G39740 391 / 6e-132 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Lus10034219 [exp] 46 / 6e-05 AT3G56320 458 / 1e-154 PAP/OAS1 substrate-binding domain superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [poplar] [flax] NTP_transf PF01909 [poplar] [flax] NTP_transf_2 Nucleotidyltransferase domain CL0260 [poplar] [flax] PF03828 [poplar] [flax] PAP_assoc Cid1 family poly A polymerase
Representative CDS sequence Show only first row Show all	>Potri.001G400800.1 pacid=42792763 polypeptide=Potri.001G400800.1.p locus=Potri.001G400800 ID=Potri.001G400800.1.v4.1 annot-version=v4.1 ATGGAATCCCCAGTTCAAGCCCAAGCAATTCCTCTTTACGAAACCCTAACCCTAACCCCACTTTCTCCTTCACCCACTGCCACTCCAATTCGATCGCCGC TGTCCGATCCTCTCCAACCCTACTCTGTATTCCGCAATGAGATTTCTCTCTCCGCCTTCAATTCTGCTGCTGCTGCGGAATCTGCTGCACCTGATTTCTT CTCTCTTGATGTTGGAAGCGGTGATGAGGAGGAGTTGGAGCTGAAGACGCCTGTTAATGGAGAGGCTAAGGGGAAGAGGAAAGCGGAGGTGGAGACGGAG AACTTGCCGGAACCAATGACGGAGAGCGTGTGGTTTAGAGGGGATAGTAAATTTAGGAGTCCGATGTTACAGTTACATAAAGAGATAGTGGATTTCTGTG ATTTTCTGTCACCAACTCAGGAGGAACAAGCTTCACGTGCTGAAGCTGTACGATGTGTTTTTGATGTTATTAAATATATATGGCCCAATTGTAAGGTGGA AGTTTTTGGTTCGTTTAGGACAGGACTTTATCTTCCAACCAGTGACATTGATGTTGTGATTCTGGGTTCAGGACTAAAAAGCCCACAGATTGGTTTAAAC GCTCTTTCCAGGGCCTTGTCTCAGAAGGGCGTTGCAAAGAAGATACAGGTGATAGCGAGGGCTCGTGTGCCCATTGTTAAATTCGTTGAAAAGAGAAGTG GTGTTTCCTTTGATATAAGTTTTGATGTGAACGGTGGACCCATAGCTGCTGAGTTTATCAAGAATGCAATATCCAAGTGGCCTGAACTACGACCATTATG TTTGATTTTGAAAGTATTCCTACAACAAAGAGAACTCAACGAGGTATACTCTGGCGGCATAAGTTCTTATGCTCTGCTTGCCATGCTTATGGCAATGTTG CAGAATCATAGGGAGTGCCAGGCTTCTCTAGAACGTAATTTGGGGCTTCTCTTGATACACTTTTTTGATTTTTATGGACGCAAATTGAACACCACAAATG TTGGTGTATCTTGCAAGGGGACTGGGACATTCTTTTCAAAGCGTACCAAAGGGTTTATGAACAATGGACGGCCATTTCTCATTGCAATTGAAGACCCACA GGCACCAGAGAATGACATTGGCAAGAATTCATTCAATTATTTCCAGATTAGATCTGCTTTTGCAATGGCTTTTACAACCTTGACAAATCCGAAGACCATC CTAAGCTTAGGACCCAACAGGAGCATTCTTGGTACCATAATTAGACCTGACCCAGTTTTGCTGGAACGCAAAGGAGGGAAAAATGGAGAGGTAACTTTTA GCAGCTTGCTGCCTGGAGCTGGGGAGCCCTTGCAGTCAAATTATGGACAACAGGAAATTTTGTGCAATTGGCAGTTGGATGATGAAGAAGAAGCATTACC ACGAGGAGGCGGGGATGCTGGAGATGGTAGTGCACATTCCTCTGGAAAGAAGAGGAAAGCTTCTTCTAAAGAGAAGTCTCGGAAGAAAAAGTCGAAAGAA AATGGTGACATTGGGAAGGTGAGACATGATGAAAGTGGCTCAAAGAAAGAGAAGTCAACAAAGAAGAAACAGCGATGGAGAAAAAATGATAGCTCCAAGG GTTTTGCCAGTCACGCTGCTGGGTCTTCATAG
AA sequence Show only first row Show all	>Potri.001G400800.1 pacid=42792763 polypeptide=Potri.001G400800.1.p locus=Potri.001G400800 ID=Potri.001G400800.1.v4.1 annot-version=v4.1 MESPVQAQAIPLYETLTLTPLSPSPTATPIRSPLSDPLQPYSVFRNEISLSAFNSAAAAESAAPDFFSLDVGSGDEEELELKTPVNGEAKGKRKAEVETE NLPEPMTESVWFRGDSKFRSPMLQLHKEIVDFCDFLSPTQEEQASRAEAVRCVFDVIKYIWPNCKVEVFGSFRTGLYLPTSDIDVVILGSGLKSPQIGLN ALSRALSQKGVAKKIQVIARARVPIVKFVEKRSGVSFDISFDVNGGPIAAEFIKNAISKWPELRPLCLILKVFLQQRELNEVYSGGISSYALLAMLMAML QNHRECQASLERNLGLLLIHFFDFYGRKLNTTNVGVSCKGTGTFFSKRTKGFMNNGRPFLIAIEDPQAPENDIGKNSFNYFQIRSAFAMAFTTLTNPKTI LSLGPNRSILGTIIRPDPVLLERKGGKNGEVTFSSLLPGAGEPLQSNYGQQEILCNWQLDDEEEALPRGGGDAGDGSAHSSGKKRKASSKEKSRKKKSKE NGDIGKVRHDESGSKKEKSTKKKQRWRKNDSSKGFASHAAGSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53770			Nucleotidyltransferase family ...		Potri.001G400800 [exp]	0	1
AT1G68990		MGP3	male gametophyte defective 3 (...		Potri.008G112800 [exp]	1.73	0.8781
AT5G51300			splicing factor-related (.1.2....		Potri.003G107200 [exp]	2.82	0.8758
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Potri.009G160100 [exp]	3.87	0.8755
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	4.00	0.8955
AT4G04940			transducin family protein / WD...		Potri.018G148066 [exp]	5.19	0.8505
AT4G04790			Tetratricopeptide repeat (TPR)...		Potri.011G133100 [exp]	7.00	0.8697
AT5G26760			unknown protein		Potri.015G010900 [exp]	8.94	0.8493
AT2G33730			P-loop containing nucleoside t...		Potri.012G045800 [exp]	10.09	0.8702
AT3G06190		ATBPM2	BTB-POZ and MATH domain 2 (.1....		Potri.008G200700 [exp]	10.19	0.7887
AT3G08020			PHD finger family protein (.1)		Potri.009G059500 [exp]	10.95	0.8612

Compare expression of checked genes

Potri.001G400800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.