Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15370 348 / 2e-122 ATHEXPALPHA1.24, ATEXP12, ATEXPA12 expansin 12 (.1) AT4G01630 271 / 5e-92 ATEXP17, ATHEXPALPHA1.13, ATEXPA17 EXPANSIN 17, expansin A17 (.1) AT2G40610 266 / 5e-90 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT2G03090 259 / 3e-87 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT1G69530 258 / 8e-87 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT1G20190 255 / 1e-85 ATHEXPALPHA1.14, ATEXP11, ATEXPA11 EXPANSIN 11, expansin 11 (.1) AT5G56320 254 / 4e-85 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT5G05290 253 / 2e-84 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G39700 250 / 1e-83 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT3G29030 246 / 9e-82 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G184700 [exp] 272 / 3e-92 AT4G01630 394 / 4e-140 EXPANSIN 17, expansin A17 (.1) Potri.008G088300 [exp] 263 / 1e-88 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.016G135200 [exp] 261 / 4e-88 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.001G001100 [exp] 261 / 8e-88 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.013G060800 [exp] 260 / 1e-87 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.005G244100 [exp] 260 / 2e-87 AT1G20190 404 / 3e-144 EXPANSIN 11, expansin 11 (.1) Potri.019G057500 [exp] 258 / 1e-86 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.006G108000 [exp] 258 / 1e-86 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.010G167200 [exp] 258 / 3e-86 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033011 [exp] 275 / 4e-93 AT3G29030 389 / 2e-138 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) Lus10009253 [exp] 267 / 3e-90 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1) Lus10038013 [exp] 267 / 4e-90 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1) Lus10007205 [exp] 266 / 1e-89 AT4G01630 400 / 2e-142 EXPANSIN 17, expansin A17 (.1) Lus10034227 [exp] 263 / 1e-88 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10034548 [exp] 261 / 8e-88 AT1G20190 400 / 1e-142 EXPANSIN 11, expansin 11 (.1) Lus10008603 [exp] 260 / 2e-87 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10042214 [exp] 259 / 5e-87 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10017256 [exp] 258 / 1e-86 AT1G20190 378 / 5e-134 EXPANSIN 11, expansin 11 (.1) Lus10021845 [exp] 257 / 3e-86 AT1G20190 397 / 1e-141 EXPANSIN 11, expansin 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.001G401700.1 pacid=42788303 polypeptide=Potri.001G401700.1.p locus=Potri.001G401700 ID=Potri.001G401700.1.v4.1 annot-version=v4.1 ATGGGACCTTTTGTCACTCTTTCTGTTTTGGTTTGCCAATTTCTTTTCTTTGTTTGCTTGCTTAGTTTGAAGGGGATTAATGGTGGTTGGCTCAATGCTC ATGCAACCTTCTATGGCGCCAATCAGAGCCCCGCCACTCTTGGAGGAGCTTGTGGATATGACAACACCTTCCATGCCGGATTTGGAGTGAACACGGCGGC CGTGAGTGGTGCACTGTTTAGAGGTGGAGAGGCATGTGGTGCTTGCTACCAATTAATGTGCAACTATAGGGCAGATCCCAAGTGGTGCCTCCGACGTGCA GTTATTACGGTAACTGCCACCAATTTCTGCCCTCCAAATAATAATGGAGGGTGGTGCGATCCTCCTCGCCAGCATTTTGACATGTCCATGCCTGCTTTCT TTCGCATTGCACGACAAGGCAATGAAGGCATAGTTCCTGTGCTCTATAGGAGGGTATCGTGCACAAGAAGAGGAGGAGTTCGTTTCACTCTGAGGGGACA ATCAAACTTCAACCTGGTCATGATCTCTAACGTTGGTGGTAGTGGTGATATCAAGGCTGCATGGGTTAGAGGCTCAAGGGCAAGATCATGGGTGCCATTG CACAGGAATTGGGGTGCAAATTGGCAAAGCAGTTTCGATCTTCGAAACCAAAAACTGTCTTTTAAGCTCACTTTAGTTGATGGAAAAACACTGGAATTTT TTAATGTTGTTCCTTCAACTTGGATGTTTGGACAGACATTTTCTTCTCGAAGTCAGTTCTCTTAA
AA sequence Show only first row Show all	>Potri.001G401700.1 pacid=42788303 polypeptide=Potri.001G401700.1.p locus=Potri.001G401700 ID=Potri.001G401700.1.v4.1 annot-version=v4.1 MGPFVTLSVLVCQFLFFVCLLSLKGINGGWLNAHATFYGANQSPATLGGACGYDNTFHAGFGVNTAAVSGALFRGGEACGACYQLMCNYRADPKWCLRRA VITVTATNFCPPNNNGGWCDPPRQHFDMSMPAFFRIARQGNEGIVPVLYRRVSCTRRGGVRFTLRGQSNFNLVMISNVGGSGDIKAAWVRGSRARSWVPL HRNWGANWQSSFDLRNQKLSFKLTLVDGKTLEFFNVVPSTWMFGQTFSSRSQFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15370		ATHEXPALPHA1.24...	expansin 12 (.1)		Potri.001G401700 [exp]	0	1
AT2G32730			26S proteasome regulatory comp...		Potri.004G183750 [exp]	2.23	0.6347
AT1G74220			unknown protein		Potri.012G061700 [exp]	13.07	0.5704
AT3G60650			unknown protein		Potri.002G144400 [exp]	15.19	0.5617
					Potri.018G041650 [exp]	16.43	0.5732
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Potri.007G070250 [exp]	29.66	0.5571
AT4G14965		ATMAPR4	membrane-associated progestero...		Potri.006G023801 [exp]	38.07	0.5293
AT1G53210			sodium/calcium exchanger famil...		Potri.004G052800 [exp]	41.01	0.5492
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.005G179000 [exp]	45.82	0.5842	Pt-PDI.2
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Potri.011G114700 [exp]	46.04	0.4562
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.008G223500 [exp]	51.23	0.5114

Compare expression of checked genes

Potri.001G401700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.