Plant FIBer expression Database

Potri.001G401850 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53592 44 / 9e-06 FBD-like domain family protein (.1)
AT4G15060 44 / 5e-05 unknown protein
AT3G23955 43 / 0.0002 F-box family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G121400
[exp]
73 / 1e-14 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1)
Potri.011G121500
[exp]
72 / 2e-14 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08387 FBD FBD
Representative CDS sequence
>Potri.001G401850.1 pacid=42792805 polypeptide=Potri.001G401850.1.p locus=Potri.001G401850 ID=Potri.001G401850.1.v4.1 annot-version=v4.1
ATGCAAAAGTCTCGGCTCAGGATATCTGGAACCTATCATTCTTCCAGTGTTAGTGCATGGATTTCCTCAGCAGTTAGGGCTAGAGTTGGGGAGATGCTTA
TGCTTGCGGAAGACACCAAGCATAGTCTTTTTAGTTGTGAGACATTAGTGCTTTTGAACGTTAGTTGTTATCGGATTGCTTTTCATGTTTATCCAAGCAC
TGTATGCTTTCCACGTCTAAAGGTCCTTCATCTTGATTGTCTTTCCCCAATGCATGGTAATGCTTGCATAGAGATAGTATTATCACTGAAACGTTTGATG
ATGCAATTACTACGTGCTTATGACTACCTTGAAGATGATGATCTTCGAGCTTATAGAATACTTACTCTTGACACCCCGAACCTAGAGCTTCTTAAACTCA
CTGATTCTGCATCCGAGGAGTTGAACATATTGCACAAGACACTCTCACTAGCAGAGGCAACTGATAATCAGGATACCCCTCAATGGCGAGGTCCTCATGG
AAATGCGGTACTGTCCCATTGCTTGTCGTCATGCCTTGAGGTGATTGAGTTTAAAAATCTTGAAGGGCAGTTAGCAGAGATAAAAATTGTGGAATATTGC
TTAAGGAATGCTCGGGTCTTGAAGAAGATGACTATCAGATACGAGATGGAGATTGATAATTCAAAAGAAGATGTAATACAGAGAGTTCTTCTACAGGTTC
TGAAGTTGTATTCTATTGTTAGCTATGCAAATGTTCAGGCCTAG
AA sequence
>Potri.001G401850.1 pacid=42792805 polypeptide=Potri.001G401850.1.p locus=Potri.001G401850 ID=Potri.001G401850.1.v4.1 annot-version=v4.1
MQKSRLRISGTYHSSSVSAWISSAVRARVGEMLMLAEDTKHSLFSCETLVLLNVSCYRIAFHVYPSTVCFPRLKVLHLDCLSPMHGNACIEIVLSLKRLM
MQLLRAYDYLEDDDLRAYRILTLDTPNLELLKLTDSASEELNILHKTLSLAEATDNQDTPQWRGPHGNAVLSHCLSSCLEVIEFKNLEGQLAEIKIVEYC
LRNARVLKKMTIRYEMEIDNSKEDVIQRVLLQVLKLYSIVSYANVQA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G53592 FBD-like domain family protein... Potri.001G401850
[exp]
0 1
AT5G50110 S-adenosyl-L-methionine-depend... Potri.015G071001
[exp]
1.41 0.8686
AT5G47320 RPS19 ribosomal protein S19 (.1) Potri.019G101950
[exp]
4.35 0.7468
AT3G15390 SDE5 silencing defective 5 (.1.2) Potri.001G401900
[exp]
6.00 0.8180
AT5G43900 XI-6, XI-2, ATM... MYOSIN XI-6, MYOSIN X1 2, ARAB... Potri.010G062520
[exp]
6.48 0.7659
AT1G26660 Prefoldin chaperone subunit fa... Potri.010G163600
[exp]
6.92 0.8222
Potri.003G223700
[exp]
7.48 0.8211
Potri.001G357150
[exp]
8.66 0.7272
AT3G19620 Glycosyl hydrolase family prot... Potri.001G294700
[exp]
8.77 0.8124
AT5G50920 CLPC1, CLPC, AT... HEAT SHOCK PROTEIN 93-V, DE-RE... Potri.005G197400
[exp]
9.79 0.7771
AT1G47230 CYCA3;4 CYCLIN A3;4 (.1.2) Potri.008G008551
[exp]
10.24 0.8184

Potri.001G401850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.