Plant FIBer expression Database

Potri.001G402100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G402100.1 pacid=42787561 polypeptide=Potri.001G402100.1.p locus=Potri.001G402100 ID=Potri.001G402100.1.v4.1 annot-version=v4.1
ATGGCAGCACTAAAATGTGCCTACGTGGGTCTCTTGGTCTTGCTATGCTCAAGCTTCAGTTTCGCTCACAGATTCTTTTTGGACAATGATGACCAAATGC
ATGAAGGCGAACGCCATGGTAGTACTGATGATCCTGGGACCGGGACTGGAATTGGAAAAGATTTTGGGTTTGGCAGTGGCGCCGGGTCAAGTGGAGTAGG
TGTTGGGTTTGGGTCAGGTTCTAGTGGACATGGCAATGGACTCGGGTCAGGATCTGGTGGTTATTGGTTAGGGTATGGAGTCGGGTATGGATCTGGTCGG
AATGGATATGAAGATCCCGGGACTGGTGGATCCGGCTGGGGCATTGGAGTAGGTTCAGATGGGTCTGTGTCTGGAACTGGTGGAGTAGGCTTCATCCCAG
GATTGCCTGGTTTTGGTCTTGGGGGTAGCATAAGATGGCCTGGCTTTGACTTTGGGGGTAACATAGGTGGAGGGATTGGAACAGGACAAGGCAGCGGTGG
CAGCAGTGGTGGAATAGGGCAAGGTGGCAGCAGTGGTGGCACGATAGCAGGAATTGGTATGCCTCCACCACACTTCATTCCGGGGTATGGTCAAATAGGC
AATGGATGTACCTGCAGCCCAGAATGTTATAATCAAGTTTCAACAATGAAGGGAGGATCAGCATCAAAAACAAATGATGAGCACAACAGTGGAGCTCAGA
ATGAGGTCTCTAGAGACGAGGCTCATGAGTCCATCGATGTGGCCATGGAGCCATGGAGTCCACATGAGACTCATGAATCCAACGTTGCAACCACGGAGCC
ATACAGTCCATGA
AA sequence
>Potri.001G402100.1 pacid=42787561 polypeptide=Potri.001G402100.1.p locus=Potri.001G402100 ID=Potri.001G402100.1.v4.1 annot-version=v4.1
MAALKCAYVGLLVLLCSSFSFAHRFFLDNDDQMHEGERHGSTDDPGTGTGIGKDFGFGSGAGSSGVGVGFGSGSSGHGNGLGSGSGGYWLGYGVGYGSGR
NGYEDPGTGGSGWGIGVGSDGSVSGTGGVGFIPGLPGFGLGGSIRWPGFDFGGNIGGGIGTGQGSGGSSGGIGQGGSSGGTIAGIGMPPPHFIPGYGQIG
NGCTCSPECYNQVSTMKGGSASKTNDEHNSGAQNEVSRDEAHESIDVAMEPWSPHETHESNVATTEPYSP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G402100
[exp]
0 1
AT5G56150 UBC30 ubiquitin-conjugating enzyme 3... Potri.019G083800
[exp]
11.87 0.8793 UBC.5
AT4G00560 NAD(P)-binding Rossmann-fold s... Potri.014G079700
[exp]
23.45 0.8598
AT4G13950 RALFL31 ralf-like 31 (.1) Potri.017G059500
[exp]
47.32 0.8223
AT3G12180 Cornichon family protein (.1) Potri.016G051000
[exp]
77.94 0.8380
AT1G67370 ASY1, ATASY1 ASYNAPTIC 1, DNA-binding HORMA... Potri.003G173200
[exp]
136.09 0.8082 ASY1.1
AT4G17910 transferases, transferring acy... Potri.003G093300
[exp]
141.35 0.8141
AT1G10550 XTH33, XET xyloglucan:xyloglucosyl transf... Potri.014G115000
[exp]
148.19 0.8065 Pt-XTH33.1
AT4G22540 ORP2A OSBP(oxysterol binding protein... Potri.003G111600
[exp]
156.35 0.7889
AT1G71160 KCS7 3-ketoacyl-CoA synthase 7 (.1) Potri.001G211400
[exp]
204.88 0.7892
AT4G00290 Mechanosensitive ion channel p... Potri.014G088200
[exp]
220.94 0.7975

Potri.001G402100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.