Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07750 330 / 6e-112 RmlC-like cupins superfamily protein (.1) AT2G28680 322 / 1e-108 RmlC-like cupins superfamily protein (.1) AT1G03880 103 / 2e-24 CRB, CRU2 CRUCIFERIN B, cruciferin 2 (.1) AT5G44120 97 / 5e-22 ATCRA1, CRU1, CRA1 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) AT1G03890 97 / 7e-22 RmlC-like cupins superfamily protein (.1) AT4G28520 79 / 8e-16 CRC, CRU3 CRUCIFERIN C, cruciferin 3 (.1.2.3.4) AT2G28490 50 / 1e-06 RmlC-like cupins superfamily protein (.1) AT3G22640 46 / 3e-05 PAP85 cupin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G102900 [exp] 342 / 1e-116 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.007G047200 [exp] 333 / 6e-113 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.019G004500 [exp] 117 / 6e-29 AT5G44120 386 / 3e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004400 [exp] 115 / 3e-28 AT5G44120 388 / 5e-131 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.001G308050 [exp] 113 / 1e-27 AT5G44120 392 / 1e-132 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004200 [exp] 110 / 1e-26 AT5G44120 383 / 6e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004300 [exp] 109 / 2e-26 AT5G44120 385 / 7e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224400 [exp] 100 / 6e-23 AT5G44120 280 / 4e-89 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224700 [exp] 66 / 8e-12 AT5G44120 394 / 7e-134 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005438 [exp] 332 / 1e-111 AT1G07750 569 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10015219 [exp] 328 / 3e-111 AT1G07750 568 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10040867 [exp] 310 / 5e-104 AT2G28680 517 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10005880 [exp] 303 / 2e-101 AT2G28680 518 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10010341 [exp] 109 / 2e-26 AT5G44120 409 / 2e-139 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011816 [exp] 102 / 6e-24 AT5G44120 357 / 1e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10003554 [exp] 94 / 6e-21 AT1G03890 282 / 5e-90 RmlC-like cupins superfamily protein (.1) Lus10021868 [exp] 91 / 6e-20 AT5G44120 330 / 2e-109 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10033893 [exp] 91 / 1e-19 AT1G03890 272 / 5e-86 RmlC-like cupins superfamily protein (.1) Lus10021179 [exp] 91 / 1e-19 AT5G44120 385 / 1e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00190 [poplar] [flax] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Potri.001G402600.2 pacid=42789605 polypeptide=Potri.001G402600.2.p locus=Potri.001G402600 ID=Potri.001G402600.2.v4.1 annot-version=v4.1 ATGGATTTCGACTTATCTCCAAGGTTAGCCCAACAGTTATTTGATGGAGAAGCTGGATCTTACTACAGCTGGTCAAGTTCTGAGTTTCCGTTGCTAGCAG AGGAAAAGGTTGGTGCAGGAAGACTTGTCCTTCAGCCTCGTGGTTTTGCTCTTCCCCATTATGCCGATTCCTCTAAAATTGGCTATGTTCTGCAAGGTAG TGATGGAATAGTGGGAATGGTGCTCCCAAACTCGTCAGAAGAGGTGGTGTTAAGACTCAAGAAAGGAGACGTAATACCGGTGCCTCTTGGAGCATTGTCT TGGTGGTACAACAATGGAGATCACTCAGAAGAAGTCGTTGTAGTTTTCTTAGGGCAAACTTCCAAGGCACACATCCCTGGCGAATTCACCTACTTCTTCT TAAGTGGAGGCCAAGGTATCATGGGAGGGTTCTCGACAGAATTCATTAGCAGAGCTTATAAGATGAACGGAAAGGAAGCGGACAAGCTTGCTAAAAGCCA GACTGGGATTTTGCTCATTAAGCTAGAGCCAGGAATAAGCATGCCCCACCCTAACACGGAAATTGTTGAAAAAATGGTGTACAACATTGATGCTGCTTTG GCTGACGTTGATGTCAGAGGGGGTGGTGTGTTTAAGGCATTGACAGCAGCTAGATTTCCTTTTCTTGAAGAAGCAGGCTTAAGCGTTAACCATGTGAAAA TGGAAGCTAATGCCATGTACTCGCCATCATACACCGCCGACGGCACATTTCAAGTTTTTTATGTTGCTAGAGGCACCGGCCGCGTCCAGGTTGTGGGGAT TGGTGGTAAGCGTGTCCTGGACACCAAAATACAGGCTGGTCAATTACTTGTGGTGCCAAGATTCTTCGTGGTTGCTCAGATTGCTGACAGTGAAGGAATG GAGTTTGTTTCCATTCTCCCTGGTACAAGCCCCGCCGTTGAAGAGTTTGCGAGCAAGAAATCAGTGTGGAATGCTTTATCTCCAATAGTTTCACAAGTTG CTCTAAGCGTGACTCCAGAGTTTGAGGAATTTTTCAAGTCCAATATGCAGAAGACCACTATTCTTATCCCGCCCACCAATTAA
AA sequence Show only first row Show all	>Potri.001G402600.2 pacid=42789605 polypeptide=Potri.001G402600.2.p locus=Potri.001G402600 ID=Potri.001G402600.2.v4.1 annot-version=v4.1 MDFDLSPRLAQQLFDGEAGSYYSWSSSEFPLLAEEKVGAGRLVLQPRGFALPHYADSSKIGYVLQGSDGIVGMVLPNSSEEVVLRLKKGDVIPVPLGALS WWYNNGDHSEEVVVVFLGQTSKAHIPGEFTYFFLSGGQGIMGGFSTEFISRAYKMNGKEADKLAKSQTGILLIKLEPGISMPHPNTEIVEKMVYNIDAAL ADVDVRGGGVFKALTAARFPFLEEAGLSVNHVKMEANAMYSPSYTADGTFQVFYVARGTGRVQVVGIGGKRVLDTKIQAGQLLVVPRFFVVAQIADSEGM EFVSILPGTSPAVEEFASKKSVWNALSPIVSQVALSVTPEFEEFFKSNMQKTTILIPPTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07750			RmlC-like cupins superfamily p...		Potri.001G402600 [exp]	0	1
AT5G39110			RmlC-like cupins superfamily p...		Potri.009G140350 [exp]	3.46	0.7024
AT3G17790		ATACP5, ATPAP17...	purple acid phosphatase 17 (.1...		Potri.015G031400 [exp]	13.41	0.6767
AT5G09960			unknown protein		Potri.005G084700 [exp]	18.00	0.6312
AT1G53820			RING/U-box superfamily protein...		Potri.003G073300 [exp]	20.90	0.6458
AT4G31980			unknown protein		Potri.003G209100 [exp]	35.70	0.6484
AT1G67060			unknown protein		Potri.004G098800 [exp]	37.04	0.6361
AT4G25030			unknown protein		Potri.010G219900 [exp]	48.00	0.6475
AT3G52110			unknown protein		Potri.006G054900 [exp]	51.57	0.6625
AT2G38710			AMMECR1 family (.1.2)		Potri.010G240000 [exp]	69.23	0.6060
AT1G02180			ferredoxin-related (.1)		Potri.014G044500 [exp]	101.78	0.6207

Compare expression of checked genes

Potri.001G402600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.