Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15430 724 / 0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT3G26100 213 / 1e-62 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G63860 147 / 4e-39 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G42140 138 / 1e-34 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 135 / 1e-33 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 134 / 5e-33 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 132 / 2e-32 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G16040 120 / 9e-30 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G65920 117 / 8e-28 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 113 / 3e-26 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G121900 [exp] 922 / 0 AT3G15430 743 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.015G009400 [exp] 211 / 9e-62 AT3G26100 809 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.012G018600 [exp] 205 / 9e-60 AT3G26100 798 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.007G100200 [exp] 143 / 2e-37 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.001G276900 [exp] 134 / 4e-33 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 131 / 3e-32 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.004G101800 [exp] 127 / 3e-32 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 125 / 1e-31 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.008G167500 [exp] 128 / 3e-31 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011399 [exp] 196 / 1e-56 AT3G26100 805 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10006455 [exp] 197 / 2e-56 AT3G26100 809 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10006242 [exp] 189 / 6e-54 AT3G26100 796 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10039618 [exp] 153 / 3e-41 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10036945 [exp] 147 / 3e-39 AT3G26100 565 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10029536 [exp] 141 / 7e-37 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10009701 [exp] 139 / 9e-35 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036030 [exp] 137 / 6e-34 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10037192 [exp] 135 / 2e-33 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036737 [exp] 131 / 4e-32 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Potri.001G402800.2 pacid=42788827 polypeptide=Potri.001G402800.2.p locus=Potri.001G402800 ID=Potri.001G402800.2.v4.1 annot-version=v4.1 ATGGCTAATAGGTATAGGCTGGCTTCTATCGAGGATTTTCCATCACATTTGATTTTTGAAATTCTGACAATCGGTAGGCTTAGTGCTGCTGACCTCGTGT GCTTAGAGTTGACTTCTAGGACATTTGGAGCGAGTCATGGGCTGTACCCTCAAAAATTCAGGTCGTTGGTGGATTTTGCAGCACATCAGTTATGTGTGTC GCATAGAGTGTATGGCGGGATGGGGTGGAATGCTCAGAAAGAGTTGTTTGATCGTTGTGGAGGAAATTGGAAGCGGGTTTTGAGGTTCTTGCAGGCTGTG GAGGAATCATCAGGCATGGTCAAGACCTCAGCATGCAATATGCAGGTTACAACTGGAAGATATCACACGTTGCTGATCAGAGATTCATCTGTATATTCTT GTGGTTCCAGTTTGTGTGGTGTTCTTGGACATGGTGCTGAAACAACACAATGTGTAGCATTCACACGGATTAGATTCCCATCTTTGGCTAACGTGGTCCA AGTCTCAGCCTCCCATAATCATGCTGCTTTTGTTTTGCAGTCCGGAGAGGTTTTCACTTGTGGTGATAATTCATCATTTTGCTGCGGTCACAAAGATACA AATCGCCCCATATTTAGGCCCAGGCTTGTTGAGGCACTAAAGGCAGTTTCATGCAAGCAGGTTTCTGTGGGCCTTAACTTTACAGTGTTCCTCACAAGAC AAGGCCAGCTTTATACATGTGGGTCGAACACACATGGGCAACTTGGTCATGGTGACACGCTAGACAGACCAACACCCAAAATCATTGAACTGCTTGAGGG AATTGGTCCTGTGGTTCAAATAGCTGCTGGTCCCAGCTACGTGTTAGCTGTAACTGACAATGGTGTAGTTTACTCTTTTGGTTATGGTTCTAATTTTTGT CTTGGTCATGGAGAGCAACACGATGAGTTCCAGCCACGTGCAATCCAGACATTTAGAAGAAAGGATATTCATGTGGTCCATGTTTCTGCTGGGGATGAGC ATGCTGTGGCACTTGATTCAAGTGGATTTGTCTATAGTTGGGGAAAAGGTTACTGTGGAGCATTAGGCCATGGGGATGAGATTGATAAGACTCTTCCTTC CCTTGTGAACTGCCTTAAGAGCCGCCTTGCTGTGCAGGCTTGTGCAAGAAAAAGAAAAACATTTGTTCTGGTCGATGATGGTTCTGTTTATGGCTTTGGG TGCATGGGATTTGGTAGCCTTGGCTTTCCAGATAGGGATATAACTGAAAAAGTGATGACACCTCGAGTCCTTGATAGCTTAAGAGCTCATCGTGTTTCTC AGATTAGCACAGGCCTCTACCACACTGTCGTGGTTACCAACCAGGGCCAAATGTTTGGATTTGGAGATAATGAAAGAGTACAACTTGGGCACGACACATT GAGGGGATGCCTGCAACCAACTGAAATATTTGTTCAAGAAACAGCAGATGATACAGGCCTTACTTTGGAAAGGAAATGA
AA sequence Show only first row Show all	>Potri.001G402800.2 pacid=42788827 polypeptide=Potri.001G402800.2.p locus=Potri.001G402800 ID=Potri.001G402800.2.v4.1 annot-version=v4.1 MANRYRLASIEDFPSHLIFEILTIGRLSAADLVCLELTSRTFGASHGLYPQKFRSLVDFAAHQLCVSHRVYGGMGWNAQKELFDRCGGNWKRVLRFLQAV EESSGMVKTSACNMQVTTGRYHTLLIRDSSVYSCGSSLCGVLGHGAETTQCVAFTRIRFPSLANVVQVSASHNHAAFVLQSGEVFTCGDNSSFCCGHKDT NRPIFRPRLVEALKAVSCKQVSVGLNFTVFLTRQGQLYTCGSNTHGQLGHGDTLDRPTPKIIELLEGIGPVVQIAAGPSYVLAVTDNGVVYSFGYGSNFC LGHGEQHDEFQPRAIQTFRRKDIHVVHVSAGDEHAVALDSSGFVYSWGKGYCGALGHGDEIDKTLPSLVNCLKSRLAVQACARKRKTFVLVDDGSVYGFG CMGFGSLGFPDRDITEKVMTPRVLDSLRAHRVSQISTGLYHTVVVTNQGQMFGFGDNERVQLGHDTLRGCLQPTEIFVQETADDTGLTLERK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15430			Regulator of chromosome conden...		Potri.001G402800 [exp]	0	1
AT5G46060			Protein of unknown function, D...		Potri.011G059400 [exp]	7.87	0.7481
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.015G086400 [exp]	34.49	0.6240
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.009G060800 [exp]	47.01	0.6113	CESA4.5
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.004G070500 [exp]	65.38	0.6361
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.013G150900 [exp]	77.42	0.6071
AT4G12850	FAR1_related		Far-red impaired responsive (F...		Potri.014G176600 [exp]	92.27	0.5790
AT5G56460			Protein kinase superfamily pro...		Potri.003G222600 [exp]	101.84	0.5702
AT5G02090			unknown protein		Potri.006G090100 [exp]	112.56	0.5940
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.012G011700 [exp]	126.47	0.5699	Pt-GLT1.3
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Potri.006G173901 [exp]	156.15	0.6021

Compare expression of checked genes

Potri.001G402800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.