Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27460 372 / 6e-127 Cystathionine beta-synthase (CBS) family protein (.1) AT5G53750 372 / 9e-127 CBS domain-containing protein (.1) AT1G65320 128 / 9e-33 Cystathionine beta-synthase (CBS) family protein (.1) AT1G80090 42 / 0.0005 AtPV42b Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G122000 [exp] 706 / 0 AT5G53750 355 / 6e-120 CBS domain-containing protein (.1) Potri.004G041000 [exp] 383 / 2e-131 AT5G53750 295 / 6e-97 CBS domain-containing protein (.1) Potri.011G050500 [exp] 379 / 8e-130 AT5G53750 261 / 1e-83 CBS domain-containing protein (.1) Potri.013G087100 [exp] 122 / 1e-30 AT1G65320 521 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1) Potri.019G052650 [exp] 100 / 3e-23 AT1G65320 516 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018183 [exp] 382 / 4e-131 AT4G27460 298 / 3e-98 Cystathionine beta-synthase (CBS) family protein (.1) Lus10025651 [exp] 381 / 2e-130 AT4G27460 301 / 2e-99 Cystathionine beta-synthase (CBS) family protein (.1) Lus10029665 [exp] 330 / 7e-111 AT5G53750 283 / 2e-92 CBS domain-containing protein (.1) Lus10042702 [exp] 323 / 8e-108 AT5G53750 278 / 3e-90 CBS domain-containing protein (.1) Lus10037535 [exp] 130 / 8e-34 AT1G65320 483 / 2e-170 Cystathionine beta-synthase (CBS) family protein (.1) Lus10011457 [exp] 130 / 1e-33 AT1G65320 485 / 2e-171 Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Potri.001G402900.1 pacid=42791132 polypeptide=Potri.001G402901.1.p locus=Potri.001G402900 ID=Potri.001G402900.1.v4.1 annot-version=v4.1 ATGGCAGTGAGTTTACTTGCACATGAGGTATCTGACCTCTGCTTAGGCAAGCCTGCTTTGAGGTCTCTCGCACTCACCACAACAATAGCTGAAGCTCTAT TTGCTCTTAAAAACTCTGATGATAACTTTATAAGTGTATGGAATTGTGATCACGCAGCAAAGACTAACAACGATTACAAAGGCAATTGTGAAGAGGAAGG TTGTGATGTTTGTGAATGTAAATGTGTCGGTAAGGTTTCTATGGTGGATGTGGTATGCTATCTTTGCAAGGATGAGAACTTGTTGTTCCCTTCTGATGCT TTGAAAGCACCTGTTTCTGTTCTCTTGCCTGAGATTCCTGGAATGGTTGTTCATGTGGAACCAACTTCAAGCTTATTGGAAGCAATTGATCTCATCCTTC AAGGAGCCAAGAATCTAGTAGTGCCGATAAAGACCAGGTATAGTACAAGAAGAAAACAGCACCAAAAACTCTCAATCACCAGCCCCACCATCCACAATGG CCGGGAATTCTGCTGGCTAACACAGGAAGACATAATCAGATTCTTCCTCGGCTCAATTGGCCTCTTTGCTCCACTTCCAGCTCTCTCCATTGATACACTT GGCATTATAAGCACTGAATTTCTTACAATTGATTATCACTCCCCTGCTATCTCAGAACTTGAAGCCATTTCTCGCTCTCTAGCAGACGAGACTTCAGTTG CTGTCATTGACAGTGATGGCATATTGATTGGGGAGCTCTCTCCATTCACTCTAGCCTGCTGTGATGACAGTGTTGCAGCTGCAATCACTACCCTTTCCTC TGGGGACTTGATGGCCTACATTGATTGTGGAGGACCCCCAGAGGACCTTGTCAAGGTGGTCATGGCAAGACTTAAAGAGAGAGGCCTAGAAGCAATGCTT CAAGAATTCACTAATTCTAGTTGCTACTCAACTACCAGTTCATGTCAATCACAATCTTCGTCATCTGATGAAGAGTCAGCAAGCAGCACCCCAGTCAGTA CACTGCATAGATCAGGAAAGTATAGTAGGTCCATGAGTTATTCAGCCAGGATGGTGAGAAGGGCGGAGGCAATAGTTTGTCATCCCAAGAGTTCACTTGT TGCAGTGATGATTCAAGCAATTGCTCATAGAGTAAATTACGTGTGGGTCATAGAGGATGACTGTAGCTTGGTTGGCATTGTCAGATTTTATGATATGCTA AAAGTTTTCAGGGAAAGTTTAGAGGATATGGCCTAA
AA sequence Show only first row Show all	>Potri.001G402900.1 pacid=42791132 polypeptide=Potri.001G402901.1.p locus=Potri.001G402900 ID=Potri.001G402900.1.v4.1 annot-version=v4.1 MAVSLLAHEVSDLCLGKPALRSLALTTTIAEALFALKNSDDNFISVWNCDHAAKTNNDYKGNCEEEGCDVCECKCVGKVSMVDVVCYLCKDENLLFPSDA LKAPVSVLLPEIPGMVVHVEPTSSLLEAIDLILQGAKNLVVPIKTRYSTRRKQHQKLSITSPTIHNGREFCWLTQEDIIRFFLGSIGLFAPLPALSIDTL GIISTEFLTIDYHSPAISELEAISRSLADETSVAVIDSDGILIGELSPFTLACCDDSVAAAITTLSSGDLMAYIDCGGPPEDLVKVVMARLKERGLEAML QEFTNSSCYSTTSSCQSQSSSSDEESASSTPVSTLHRSGKYSRSMSYSARMVRRAEAIVCHPKSSLVAVMIQAIAHRVNYVWVIEDDCSLVGIVRFYDML KVFRESLEDMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53750			CBS domain-containing protein ...		Potri.001G402900 [exp]	0	1
AT3G60450			Phosphoglycerate mutase family...		Potri.002G141000 [exp]	5.00	0.6877
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Potri.001G027000 [exp]	10.58	0.6903
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Potri.015G048000 [exp]	12.68	0.5818
AT1G80610			unknown protein		Potri.001G313900 [exp]	12.96	0.6167
AT1G67480			Galactose oxidase/kelch repeat...		Potri.013G104300 [exp]	13.49	0.6030
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.004G208600 [exp]	13.78	0.6232
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.004G223300 [exp]	14.07	0.6292
AT1G30760			FAD-binding Berberine family p...		Potri.012G034700 [exp]	16.06	0.6785
AT4G09670			Oxidoreductase family protein ...		Potri.005G200300 [exp]	20.49	0.5876
AT1G71710			DNAse I-like superfamily prote...		Potri.005G197800 [exp]	23.17	0.7191

Compare expression of checked genes

Potri.001G402900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.