Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15460 514 / 0 Ribosomal RNA processing Brix domain protein (.1) AT1G52930 510 / 0 Ribosomal RNA processing Brix domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G122200 [exp] 597 / 0 AT3G15460 517 / 0.0 Ribosomal RNA processing Brix domain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027900 [exp] 505 / 0 AT3G15460 512 / 0.0 Ribosomal RNA processing Brix domain protein (.1) Lus10002403 [exp] 494 / 1e-177 AT3G15460 519 / 0.0 Ribosomal RNA processing Brix domain protein (.1) Lus10019857 [exp] 419 / 4e-148 AT3G15460 444 / 4e-158 Ribosomal RNA processing Brix domain protein (.1) Lus10014058 [exp] 413 / 1e-145 AT3G15460 442 / 3e-157 Ribosomal RNA processing Brix domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [poplar] [flax] IIaaRS-ABD PF04427 [poplar] [flax] Brix Brix domain
Representative CDS sequence Show only first row Show all	>Potri.001G403100.1 pacid=42788032 polypeptide=Potri.001G403100.1.p locus=Potri.001G403100 ID=Potri.001G403100.1.v4.1 annot-version=v4.1 ATGGGAAAGAAGAGAAAGCACGTTGAGACACAGGTCATTGAACCTGCAAAGAAAGATGAAGGTGCACCAGAGAGACCCAAAAGGACGCTCTTGGGTTGGA AAGATAAACCCGAAGTGAAAGAGACTGAATTTATACCTCCTCAACAGGGTGGTTTTAGAAATAAAGAGAAAGTCTTGGTTACTTGTTCTAGGCGTATCAA TTTCAGGTATAGGCACTTGATGTTGAATTTGGTGTCACTTCTGCCGCATTGTAAGAAGGATAGTAAGGTTGAGTCTACAAGTACTAAAGGCGCGACATTG AATGAGCTTGTTGAGTTGAAGAATGGTTCTTCCTCTTTGTTCTTTGAGTGCAGGAAACATAAAGATTTGTATCTATGGATGGTCAAGTGCCCTAGTGGTC CGTCTGTGAAATTCTTAGTCAATGCTGTGCACACAATGGAAGAATTGAAGCTTACAGGAAATCATCTGAAAGGGTCAAGACCCCTCTTGACTTTCTCAGC TAATTTTGATAAAGATGCCCACTGGAAACTCCTGAAGGAGATGATCATTCAGATATTTGGAACTCCAAAAGATCACAGGAAATCTAAGCCTTTTTATGAC CATGTCTTTGTTTTCTCCATTGTTGATGACCATATATGGTTTCGGAATTACCAGATATCTGTTCCTCATAACGAAACAGATAAAATAGCTCGAGGAGGCC TGGATAAGATGACCCTTGTTGAGGTTGGTCCAAGATTTTGCTTGAATCCTATCAAGATTTTTGGTGGCAGCTTTGGAGGCCCAACATTGTATGAAAATCC CTTTTTTGTATCACCTAACCAGATTCGAGCACTGGAGAAAAAGCAGAAGGCTGGGAAGTTTGCCAAGAAAGTCAAAGCCAAGACGAGGAGGAAGATGCAC GAGCTATCAAATCCATTGGAGCCTGATGAATTTGCAGACATGTGGAAGGAATGA
AA sequence Show only first row Show all	>Potri.001G403100.1 pacid=42788032 polypeptide=Potri.001G403100.1.p locus=Potri.001G403100 ID=Potri.001G403100.1.v4.1 annot-version=v4.1 MGKKRKHVETQVIEPAKKDEGAPERPKRTLLGWKDKPEVKETEFIPPQQGGFRNKEKVLVTCSRRINFRYRHLMLNLVSLLPHCKKDSKVESTSTKGATL NELVELKNGSSSLFFECRKHKDLYLWMVKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSANFDKDAHWKLLKEMIIQIFGTPKDHRKSKPFYD HVFVFSIVDDHIWFRNYQISVPHNETDKIARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFFVSPNQIRALEKKQKAGKFAKKVKAKTRRKMH ELSNPLEPDEFADMWKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15460			Ribosomal RNA processing Brix ...		Potri.001G403100 [exp]	0	1
AT4G15770			RNA binding (.1)		Potri.010G024400 [exp]	1.00	0.8633
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Potri.010G119600 [exp]	4.24	0.7801
AT5G06360			Ribosomal protein S8e family p...		Potri.006G203400 [exp]	6.24	0.7706
AT1G70180			Sterile alpha motif (SAM) doma...		Potri.008G193300 [exp]	9.94	0.7335
AT1G03330			Small nuclear ribonucleoprotei...		Potri.004G219000 [exp]	12.24	0.7508
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Potri.017G129000 [exp]	13.60	0.6816
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Potri.010G206900 [exp]	16.43	0.7533
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Potri.019G062600 [exp]	16.52	0.7265	Pt-GLX2.1
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Potri.006G275300 [exp]	18.76	0.7697	FZF.2
AT2G47790			Transducin/WD40 repeat-like su...		Potri.002G205600 [exp]	18.89	0.7493

Compare expression of checked genes

Potri.001G403100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.