Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52920 601 / 0 GPCR, GCR2 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) AT2G20770 570 / 0 GCL2 GCR2-like 2 (.1) AT5G65280 342 / 9e-115 GCL1 GCR2-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G134700 [exp] 568 / 0 AT2G20770 605 / 0.0 GCR2-like 2 (.1) Potri.005G072500 [exp] 371 / 3e-126 AT5G65280 586 / 0.0 GCR2-like 1 (.1) Potri.007G096500 [exp] 362 / 1e-122 AT5G65280 553 / 0.0 GCR2-like 1 (.1) Potri.011G122300 [exp] 211 / 5e-67 AT1G52920 171 / 7e-52 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020719 [exp] 617 / 0 AT1G52920 578 / 0.0 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) Lus10033701 [exp] 560 / 0 AT2G20770 587 / 0.0 GCR2-like 2 (.1) Lus10025736 [exp] 343 / 1e-114 AT5G65280 545 / 0.0 GCR2-like 1 (.1) Lus10035926 [exp] 338 / 7e-113 AT5G65280 547 / 0.0 GCR2-like 1 (.1) Lus10031638 [exp] 238 / 4e-74 AT2G20770 238 / 3e-76 GCR2-like 2 (.1) Lus10034698 [exp] 45 / 3e-06 AT1G52920 47 / 7e-08 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF05147 [poplar] [flax] LANC_like Lanthionine synthetase C-like protein
Representative CDS sequence Show only first row Show all	>Potri.001G403200.1 pacid=42788685 polypeptide=Potri.001G403200.1.p locus=Potri.001G403200 ID=Potri.001G403200.1.v4.1 annot-version=v4.1 ATGGGAGACCGCTCCTTCCCAAATGAAATGCCAGACTACATACCAGAAACAACGACAACAGCAGTGGACGAAACAGTCACTGAAAGAAACAACAAAGACT CACTTACAAATCTCCTGTCTTTGCCGTACAACATTCTCTCTCAAAGACTTAAAGCATCAGCCCTGGACGTCAAAGACACAGTGGTGAGGGAGACATGGGG AATGAGTGGGAAGAGAGTGAAAGATTATAGTTTGTACACCGGGGCATTAGGGACTGCATACTTGCTTTTTAAAGCATACCAAGTTACCAAGAATCAGAAT GATCTTAACTTGTGCTCTGACATTATCAAGGCTTGCGATTCTGTTTCTAGAGATTCTGGACGTGTGACATTTATATGTGGACGGGCTGGTGTTTGTGCTC TTGGTGCTGTTGCAGCAAAGCATGCTGGGGATGGAAGGTTATTAGATCATTACTTAGCTCAGTTCAAAGAGATCAAACTTCCTAGTGATTTGCCATATGA GTTATTATATGGGAGAGCTGGGTTCTTATGGGCCTGCTCATTTCTAAATAAGCATATTGGTAAAGAAACCATATCTACAAGCCGCAAAAGAGCAGTTGTG GATGAAATAATTAAGGCTGGAAGATTGACACGCAAGGGAAAATGTCCACTGCTGTATGAATGGCATGGAAAAAGGTACTGGGGTGCTGCCCATGGACTGG CTGGAATCATGCTTGTTTTGATGGACTTGGAACTGACACCAGATGAGGTGGAGGATGTCAAGGGTACTTTACACTACATGATTAAGAACCATTTTCCCAG TGGCAATTATCCTTCAAGTGAAGGAAATAAATCTGATTGCCTTGTGCATTGGTGTCATGGGGCTCCTGGGATTGCTCTTACCCTTGCGAAAGCAGCTGAG GTTTTTGGAGATAAGGAGTTTCTGCAGGCAGCAATGGAGGCAGGGGAGGTGGTTTGGAACCGGGGTTTGCTAAAGCGAGTTGGCATATGTCATGGAATCA GTGGAAATACCTATGTTTTTCTTTCACTCTACCGATTAACAGGTAATGTGGAGTACTTATACAGGGCCAAAGCCTTTGCTTGCTTTCTACATGATAGAGC ACAAAAACTTGTATCAGAAGGGAAGATGCATGGAGGTGATCACCCCTATTCACTGTTTGAGGGTTTTGGAGGAATGGCTTATCTCTTCCTTGACATCCTT GAACCATCGGAAGCCAGGTTCCCTGCTTATGAACTTTAG
AA sequence Show only first row Show all	>Potri.001G403200.1 pacid=42788685 polypeptide=Potri.001G403200.1.p locus=Potri.001G403200 ID=Potri.001G403200.1.v4.1 annot-version=v4.1 MGDRSFPNEMPDYIPETTTTAVDETVTERNNKDSLTNLLSLPYNILSQRLKASALDVKDTVVRETWGMSGKRVKDYSLYTGALGTAYLLFKAYQVTKNQN DLNLCSDIIKACDSVSRDSGRVTFICGRAGVCALGAVAAKHAGDGRLLDHYLAQFKEIKLPSDLPYELLYGRAGFLWACSFLNKHIGKETISTSRKRAVV DEIIKAGRLTRKGKCPLLYEWHGKRYWGAAHGLAGIMLVLMDLELTPDEVEDVKGTLHYMIKNHFPSGNYPSSEGNKSDCLVHWCHGAPGIALTLAKAAE VFGDKEFLQAAMEAGEVVWNRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLHDRAQKLVSEGKMHGGDHPYSLFEGFGGMAYLFLDIL EPSEARFPAYEL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52920		GPCR, GCR2	G-PROTEIN COUPLED RECEPTOR 2, ...		Potri.001G403200 [exp]	0	1
AT2G48100	C2H2ZnF		Exonuclease family protein (.1...		Potri.002G215700 [exp]	1.41	0.8723
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Potri.001G465500 [exp]	2.23	0.8471	HEN902,HEN1.2
AT2G38730			Cyclophilin-like peptidyl-prol...		Potri.001G030000 [exp]	4.24	0.8592
AT5G48030		GFA2	gametophytic factor 2 (.1)		Potri.001G271300 [exp]	4.69	0.8633	Pt-GFA2.2
AT5G49220			Protein of unknown function (D...		Potri.008G213300 [exp]	4.89	0.8587
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Potri.010G148000 [exp]	6.32	0.8409
AT5G25520			SPOC domain / Transcription el...		Potri.018G034500 [exp]	6.92	0.8441
AT3G61770			Acid phosphatase/vanadium-depe...		Potri.002G171300 [exp]	10.90	0.8412
AT1G17780			unknown protein		Potri.001G376800 [exp]	11.83	0.8374
AT1G50440			RING/FYVE/PHD zinc finger supe...		Potri.008G005800 [exp]	13.49	0.8122

Compare expression of checked genes

Potri.001G403200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.