Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21760 516 / 7e-180 BGLU47 beta-glucosidase 47 (.1) AT1G61810 514 / 4e-179 BGLU45 beta-glucosidase 45 (.1.2.3) AT1G61820 509 / 2e-177 BGLU46 beta glucosidase 46 (.1.3) AT1G26560 434 / 7e-148 BGLU40 beta glucosidase 40 (.1) AT3G18080 424 / 6e-144 BGLU44 B-S glucosidase 44 (.1) AT2G44480 419 / 3e-142 BGLU17 beta glucosidase 17 (.1.2) AT1G02850 417 / 2e-141 BGLU11 beta glucosidase 11 (.1.2.3.4.5) AT3G18070 416 / 6e-141 BGLU43 beta glucosidase 43 (.1.2) AT5G54570 412 / 4e-139 BGLU41 beta glucosidase 41 (.1) AT4G27830 405 / 2e-136 BGLU10 beta glucosidase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G019700 [exp] 541 / 0 AT1G61820 655 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019500 [exp] 541 / 0 AT1G61820 657 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019800 [exp] 540 / 0 AT4G21760 658 / 0.0 beta-glucosidase 47 (.1) Potri.004G019300 [exp] 535 / 0 AT1G61820 636 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019366 [exp] 527 / 0 AT1G61820 608 / 0.0 beta glucosidase 46 (.1.3) Potri.015G041300 [exp] 434 / 6e-148 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.012G049300 [exp] 422 / 4e-143 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.001G227200 [exp] 421 / 8e-143 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.001G015100 [exp] 420 / 2e-142 AT5G44640 553 / 0.0 beta glucosidase 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032660 [exp] 756 / 0 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10007656 [exp] 547 / 0 AT1G61820 637 / 0.0 beta glucosidase 46 (.1.3) Lus10018353 [exp] 546 / 0 AT1G61820 629 / 0.0 beta glucosidase 46 (.1.3) Lus10007655 [exp] 532 / 0 AT1G61820 620 / 0.0 beta glucosidase 46 (.1.3) Lus10043093 [exp] 428 / 5e-148 AT4G21760 313 / 7e-103 beta-glucosidase 47 (.1) Lus10031808 [exp] 432 / 3e-147 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031234 [exp] 431 / 1e-146 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10009644 [exp] 425 / 4e-144 AT3G18080 812 / 0.0 B-S glucosidase 44 (.1) Lus10031235 [exp] 421 / 2e-142 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031251 [exp] 419 / 6e-142 AT2G44450 572 / 0.0 beta glucosidase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.001G403900.5 pacid=42792784 polypeptide=Potri.001G403900.5.p locus=Potri.001G403900 ID=Potri.001G403900.5.v4.1 annot-version=v4.1 ATGTTTCTGTTCCTGTCCTTTCTTCTCCTTCTAAAAAATCCATCTCTTGCTCAAAGTTTAAATGATGATGGACAAGATGTTAAAAGATCTCATTTCCCGG ATGGTTTCTTCTTCGGAACAAGCACTTCTTCATATCAGGTTGAAGGAGCTTATATTGAAGATGGTAAGGGTCTCAACAACTGGGATGTTTTTAGTCATAT CCCAGGAAACATAAAGAACAATGACAATGGAGATATAGCAGACAACCATTATTATCGTTTCTTGGAAGATATTGAGTTAATGTGTTCACTTGGAACTAAT GCATATAGGTTCTCTATATCATGGACTAGAATTCTGCCAAGAGGAAAGTTCGGTCAAGTTAATCCAAGAGGAATCATGTTCTATAACAAACTTATAGACA ATCTATTGGAGAGGGGATTGGAACCATTTGTGACGATACACCATCACGACATCCCACAAGAGCTCGTGGATAGATACGGAGGATGGCTCAGTCCTCTAAT GCAGGAAGACTTTGTATATTTTGCTGAAATTTGTTTCAAGAGCTTTGGGGATAGAATAAAAAATTGGATAACCATGAATGAGCCAAACCTACTCGTGGAC ATGTCTTATATAAGGGGATGGTACCCTCCAGCTCACTGTTCACCCCCTTTCGGCAACTGTTCTGCCGGAAATTCTGATATAGAGCCTCTCATTGCTATGC ATAACATGATATTGGGACATGCCAAGGCAGTAAAGCTATACCGTGAACATTTTCAGCTGAAACAAGGTGGTTCTATAGGGATTGTTGGATTTACAGAATA TTTTGAACCGTTAAGAGACAATGAATTAGATCGGCAAGCTGTGAGTAGGGCCCTGGCCTTCACTAATGCCTGGCTGTTCGATGCTGTAGTATTTGGGGAT TACCCTGCCGAAATGCGCCTTTATCTTGGAAGTGCACTGCCAACATTCTCACCAGAAGAAACTAGCTACGTAAAAGGAAGCTTAGATTTCATTGGTATGA ACTTTTACACATCATTATATGCCAAAGATTGCATCCATTCTGCTTGCACCTCAGGCGGGGATCGCCCTATTCGAGGCTTTGTTCACACAACTGGAGAACG GGATGGTGAGCCGATCGGAGGACGATGTGGGAATCCAAGGTTCTTTGTGGTCCCAGAGGGAATGGAGAAGATTGTCAACTACATGAAAGAGAGATACAAT AACATGCCTATGTTTGTGACTGAAAATGGGTTTTCTCCCCCGCAACAAAATGATCAAGTTCAGGCGTTATTGCAAGACACCAACAGAGTAAACTTCCATA AATCCTATCTTGCTGCTTTGGCTAGAGCAATAAGGAATGGAGCAGATGTTCGTGGATATTTCGTGTGGAGCTTGGTAGATAACTTCGAATGGATAGATGG CTACTCCCAGCGATATGGACTCTATTATGTTGATCGCCAGACACTTGAACGTGTGCCAAAGCTTTCGGCAAAGTGGTATAAAAATTTCCTTGCAAATGGC TCTTCTAATCACAACAATGAAGAAGATTTGACCATAAGATCATTCAGAAATACAAATGCCATAATATGA
AA sequence Show only first row Show all	>Potri.001G403900.5 pacid=42792784 polypeptide=Potri.001G403900.5.p locus=Potri.001G403900 ID=Potri.001G403900.5.v4.1 annot-version=v4.1 MFLFLSFLLLLKNPSLAQSLNDDGQDVKRSHFPDGFFFGTSTSSYQVEGAYIEDGKGLNNWDVFSHIPGNIKNNDNGDIADNHYYRFLEDIELMCSLGTN AYRFSISWTRILPRGKFGQVNPRGIMFYNKLIDNLLERGLEPFVTIHHHDIPQELVDRYGGWLSPLMQEDFVYFAEICFKSFGDRIKNWITMNEPNLLVD MSYIRGWYPPAHCSPPFGNCSAGNSDIEPLIAMHNMILGHAKAVKLYREHFQLKQGGSIGIVGFTEYFEPLRDNELDRQAVSRALAFTNAWLFDAVVFGD YPAEMRLYLGSALPTFSPEETSYVKGSLDFIGMNFYTSLYAKDCIHSACTSGGDRPIRGFVHTTGERDGEPIGGRCGNPRFFVVPEGMEKIVNYMKERYN NMPMFVTENGFSPPQQNDQVQALLQDTNRVNFHKSYLAALARAIRNGADVRGYFVWSLVDNFEWIDGYSQRYGLYYVDRQTLERVPKLSAKWYKNFLANG SSNHNNEEDLTIRSFRNTNAII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Potri.001G403900 [exp]	0	1
AT5G63180			Pectin lyase-like superfamily ...		Potri.011G093400 [exp]	1.00	0.8870
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.005G153800 [exp]	2.44	0.7399
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Potri.010G087900 [exp]	3.74	0.7357
AT2G28410			unknown protein		Potri.009G013800 [exp]	4.00	0.7925
					Potri.001G290000 [exp]	4.89	0.7192
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.004G081433 [exp]	6.63	0.7136
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Potri.005G108900 [exp]	7.21	0.7595
AT5G14210			Leucine-rich repeat protein ki...		Potri.015G093100 [exp]	10.24	0.7747
AT2G27310			F-box family protein (.1)		Potri.002G054500 [exp]	14.49	0.7150
AT1G34630			unknown protein		Potri.002G096500 [exp]	19.79	0.6762

Compare expression of checked genes

Potri.001G403900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.