Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATNAC3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27410 370 / 8e-129 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT3G15500 343 / 8e-118 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT1G52890 340 / 1e-116 NAC ANAC019 NAC domain containing protein 19 (.1) AT1G01720 236 / 3e-76 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G77450 230 / 2e-74 NAC ANAC032 NAC domain containing protein 32 (.1) AT5G08790 229 / 1e-73 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G04070 227 / 6e-72 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT5G63790 226 / 7e-72 NAC ANAC102 NAC domain containing protein 102 (.1) AT1G69490 223 / 2e-71 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT1G61110 223 / 9e-71 NAC ANAC025 NAC domain containing protein 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G123300 [exp] 537 / 0 AT4G27410 354 / 2e-122 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.002G081000 [exp] 239 / 1e-77 AT1G01720 416 / 5e-148 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.004G038000 [exp] 241 / 2e-77 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.011G046700 [exp] 241 / 4e-77 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.005G180200 [exp] 236 / 2e-76 AT1G01720 392 / 9e-139 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G069500 [exp] 228 / 5e-73 AT1G01720 357 / 3e-124 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.011G123500 [exp] 229 / 1e-72 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.007G099400 [exp] 227 / 1e-72 AT1G01720 366 / 6e-128 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G404400 [exp] 229 / 2e-72 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042731 [exp] 238 / 9e-77 AT1G01720 414 / 7e-147 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10025690 [exp] 237 / 2e-76 AT1G01720 405 / 1e-143 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10018142 [exp] 236 / 3e-76 AT1G01720 401 / 7e-142 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10020883 [exp] 233 / 6e-75 AT5G08790 320 / 6e-110 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10033493 [exp] 233 / 1e-74 AT5G08790 315 / 4e-108 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10006547 [exp] 234 / 3e-74 AT3G04070 337 / 4e-114 NAC domain containing protein 47 (.1.2) Lus10003269 [exp] 233 / 5e-74 AT3G04070 324 / 3e-109 NAC domain containing protein 47 (.1.2) Lus10037156 [exp] 229 / 2e-73 AT1G69490 318 / 2e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10030446 [exp] 228 / 4e-73 AT1G69490 302 / 2e-103 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10036773 [exp] 228 / 5e-73 AT1G69490 318 / 1e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.001G404100.1 pacid=42791602 polypeptide=Potri.001G404100.1.p locus=Potri.001G404100 ID=Potri.001G404100.1.v4.1 annot-version=v4.1 ATGGGAGTGCAAGAAACAGACCCTCTTGCCCAACTGAGCTTGCCACCGGGTTTTCGGTTTCACCCGACTGATGAGGAGCTATTAGTGCAATATTTGTGCA GGAAAGTTGCTGGTCACCATTTCTCGATGCAAATCATTGGTGAAATTGATTTATACAAGTTTGATCCATGGCTCTTACCAAGCAAGGCGATATTTGGTGA AAAAGAATGGTACTTCTTTAGTCCTAGAGACCGTAAGTACCCAAATGGATCCCGACCCAATAGGGTTGCCGGGTCTGGGTATTGGAAGGCCACCGGTACT GATAAAATTATCACATCAGATGGACGTAAAGTAGGTATCAAGAAAGCTCTCGTCTTTTACATTGGCAAGGCCCCAAAAGGAACCAAAACTAATTGGATCA TGCATGAATACCGCCTTATTGAATCCTCTCGCAAACATGGAAGCACGAAGTTGGACGAATGGGTATTGTGTCGGATTTATAAGAAGAAATCAATTGCTGC ACAGAAATCCATGTCAGGTGTTTCAAGCAAGGAACCTAGTACTAATAGTCCATCTTCATCATTCTCTTCTCATTTCGATGATGATGTCCTTGACCCGTTG CCGGAGATTGATGACCGCTTCCTTGACTTGCCTCGAACCAACTCACTCAAACCAAGGCAACATGAAGAGAAAATCAACTTGGCCACTCTGGGCTCAGGGA GTTTTGATTGGGCGACTCTTGCTGGGCTCAACTCGGTGCCTCAACTCGTTCAAACACAGCCTTGTGTGAGTTACTCGAACAGTAATGTTCATGATGTGTA TGTTCCTTCAATGTCCCAACTATGCCACATGGATACATCCGCGGAGAGGATGGAAAACTTGGTTGAAGAGGAGGTTCAAAGTGGAGTTAGAACTCGGCTG GATAGTGTTGGTAACCCAGTGTTTTTCCAACAAAACTCGAGCGTGAGGCCACAGAGCTTCTCTAACTCATTTGACCCGTATGGGTTAAGGCACTCGATCC AACCGGGTAGTGGGTTCGGGTTTAATCAGTAA
AA sequence Show only first row Show all	>Potri.001G404100.1 pacid=42791602 polypeptide=Potri.001G404100.1.p locus=Potri.001G404100 ID=Potri.001G404100.1.v4.1 annot-version=v4.1 MGVQETDPLAQLSLPPGFRFHPTDEELLVQYLCRKVAGHHFSMQIIGEIDLYKFDPWLLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGT DKIITSDGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLIESSRKHGSTKLDEWVLCRIYKKKSIAAQKSMSGVSSKEPSTNSPSSSFSSHFDDDVLDPL PEIDDRFLDLPRTNSLKPRQHEEKINLATLGSGSFDWATLAGLNSVPQLVQTQPCVSYSNSNVHDVYVPSMSQLCHMDTSAERMENLVEEEVQSGVRTRL DSVGNPVFFQQNSSVRPQSFSNSFDPYGLRHSIQPGSGFGFNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.001G404100 [exp]	0	1	Pt-ATNAC3.1
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.011G123300 [exp]	1.00	0.9934	Pt-ATNAC3.2,NAC036
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.006G048200 [exp]	2.44	0.9737	ZOG1.17
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Potri.001G100200 [exp]	4.47	0.9669
AT4G17350			Plant protein of unknown funct...		Potri.001G156700 [exp]	5.65	0.9302
					Potri.008G061600 [exp]	7.74	0.9647
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Potri.005G098200 [exp]	7.74	0.9667
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.005G200600 [exp]	7.93	0.9711
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Potri.013G074000 [exp]	9.00	0.9614
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Potri.001G470000 [exp]	10.39	0.9435
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Potri.015G110000 [exp]	10.95	0.9607	Pt-ERD1.3

Compare expression of checked genes

Potri.001G404100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.