Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15520 611 / 0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G01480 141 / 6e-37 ATCYP38, CYP38 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351400 [exp] 135 / 6e-35 AT3G01480 666 / 0.0 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2) Potri.017G072800 [exp] 135 / 8e-35 AT3G01480 665 / 0.0 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038601 [exp] 632 / 0 AT3G15520 597 / 0.0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10037891 [exp] 535 / 0 AT3G15520 508 / 5e-180 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10014534 [exp] 141 / 1e-36 AT3G01480 639 / 0.0 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2) Lus10032151 [exp] 104 / 4e-24 AT3G01480 512 / 0.0 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.001G404700.1 pacid=42787596 polypeptide=Potri.001G404700.1.p locus=Potri.001G404700 ID=Potri.001G404700.1.v4.1 annot-version=v4.1 ATGTGTCTGACTCTCACAACTCCAACCGCTTTCGAAGTCATGGCTTTGCCTTTATCCTCTTCTTCTATCATCATCTCTTCCAAGAAGCTCTCCTTCAATG TCTCCATCTCTCAAAAACCGACTCAAAAGCACCTTTTCCTCTCTGCCCATTTTGCATTTCGACTCAATGAAGCTCGTAGCCAAGTCACAGCAAGACCTGC TGTCCGTGCCTGCAACTCTACAACAAGTACTTATGCCAAGGATCTGGCATGCGAGCACGATTCTCCTCCTAATTTGTACATGTCGACTTTTGGAGATGGA ACGAAAAAACTTAAGAGTCTGATTGCTATGATACTTATTTTTATCCAAATTTCTGCACCAGTACCTTTGAGTGGTTGGGACTTTTGGTATGTTTCTCCAG CAAAAGCAGTGCTTTATTCTCCAGACACCAAGGTCCCAAGAACTGGGGAGCTTGCATTAAGAAAGGCTATCCCAGCAAACATAAACATGAAGTCCATACA GACTTCTCTCGAGGACATTTCATACTTGCTAAGAATTCCACAAAGAAAGCCTTATGGAACCATGGAGGGTAATGTGAAGAAAGCACTAAAGATAGCAAAG GATGAAAAGGATTCTATCCTGGCAAGTCTACCAGAAGACTTGAAGGAAAAGGGGTCTACACTGTATGCATCTCTAATAGATGGGAAGGGTGGTTTGCAAG CACTCCTTCAATGTATTAAGGATCAGGACCCAGATAGAGTTTCTGTTGGCCTTGCATCTTCACTGGATGCGGTTGCAGAGCTGGAGTTGCTGCAGGCTCC TGGGCTGTCATTTTTGTTGCCCCAGCAATACTTGAAATATCCAAGGCTAACAGGCAGAGGGACTGTTGAATTTACCATTGAGAAAGTAGATGGCTCAACA TTTTCCCCAGAAGCTGGTGGTGAACCAAAAAAGAATGCCAAAATTCAGGTTGTTATAGACGGATTCTCAGCACCATTAACAGCAGGGAATTTTGTGAAAC TGGTAGTTGATGGAGCATATAACGGGGCAAAGCTCAGCTTCACTGACCAAGCTGTTCTCACTGACAATGGACTTGATAAGAACAGTGGTTACAGTGTTCC CTTAGAGATAATGCCATCGGGCCAATTTGAACCTTTGTACCGAACAACATTAAGTGTCCAGGATGGAGAATTGCCAGTTCTTCCACTATCTGTTTACGGG GCAGTTGCAATGGCACACAGTGAGGTTTCTGAGGACTTCTCTGCACCATATCAGTTTTTCTTCTATCTCTATGATAAAAGAAATGCTGGTTTAGGAGGGC TATCTTTCGATGAAGGGCAGTTTTCAGTTTTTGGATACACAACCGCTGGGAGAGAAATTCTTTCACAGATAAAAAGTGGGGATATAATTCAATCAGCAGA GCTCGTGGAGGGTCAGGATCGCCTCATATTGCCAAATGAGAACTAA
AA sequence Show only first row Show all	>Potri.001G404700.1 pacid=42787596 polypeptide=Potri.001G404700.1.p locus=Potri.001G404700 ID=Potri.001G404700.1.v4.1 annot-version=v4.1 MCLTLTTPTAFEVMALPLSSSSIIISSKKLSFNVSISQKPTQKHLFLSAHFAFRLNEARSQVTARPAVRACNSTTSTYAKDLACEHDSPPNLYMSTFGDG TKKLKSLIAMILIFIQISAPVPLSGWDFWYVSPAKAVLYSPDTKVPRTGELALRKAIPANINMKSIQTSLEDISYLLRIPQRKPYGTMEGNVKKALKIAK DEKDSILASLPEDLKEKGSTLYASLIDGKGGLQALLQCIKDQDPDRVSVGLASSLDAVAELELLQAPGLSFLLPQQYLKYPRLTGRGTVEFTIEKVDGST FSPEAGGEPKKNAKIQVVIDGFSAPLTAGNFVKLVVDGAYNGAKLSFTDQAVLTDNGLDKNSGYSVPLEIMPSGQFEPLYRTTLSVQDGELPVLPLSVYG AVAMAHSEVSEDFSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTAGREILSQIKSGDIIQSAELVEGQDRLILPNEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15520			Cyclophilin-like peptidyl-prol...		Potri.001G404700 [exp]	0	1
AT5G04440			Protein of unknown function (D...		Potri.010G230900 [exp]	2.00	0.9743
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Potri.004G031500 [exp]	2.23	0.9793	PSBQ2.1
AT3G46780		PTAC16	plastid transcriptionally acti...		Potri.009G037000 [exp]	3.00	0.9698
					Potri.004G050600 [exp]	5.29	0.9645
AT2G05070		LHCB2.2	LIGHT-HARVESTING CHLOROPHYLL B...		Potri.002G221400 [exp]	5.29	0.9659	2,Pt-LHCB2.1
AT4G24790			AAA-type ATPase family protein...		Potri.012G091700 [exp]	9.00	0.9470
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Potri.003G052500 [exp]	10.95	0.9652	Pt-PSAH.1
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Potri.002G023600 [exp]	11.31	0.9631
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Potri.010G087300 [exp]	13.41	0.9648
AT1G13820			alpha/beta-Hydrolases superfam...		Potri.010G158800 [exp]	13.41	0.9517

Compare expression of checked genes

Potri.001G404700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.