Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10780 156 / 4e-41 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61180 154 / 3e-40 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G61190 153 / 8e-40 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61310 152 / 2e-39 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 151 / 2e-39 RFL1 RPS5-like 1 (.1) AT1G61300 149 / 1e-38 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12280 145 / 3e-37 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12220 143 / 1e-36 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G52660 138 / 1e-36 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G27190 142 / 3e-36 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G405100 [exp] 823 / 0 AT4G27220 311 / 1e-90 NB-ARC domain-containing disease resistance protein (.1) Potri.001G404800 [exp] 802 / 0 AT4G27220 323 / 5e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.011G124000 [exp] 518 / 4e-176 AT4G27220 312 / 8e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.011G124100 [exp] 372 / 1e-119 AT4G27220 279 / 6e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136301 [exp] 365 / 1e-115 AT4G27220 329 / 8e-97 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145566 [exp] 357 / 6e-114 AT4G27220 348 / 7e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.T012900 [exp] 335 / 2e-109 AT4G27220 212 / 4e-59 NB-ARC domain-containing disease resistance protein (.1) Potri.T044800 [exp] 341 / 5e-108 AT4G27220 310 / 3e-91 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136500 [exp] 343 / 7e-108 AT4G27220 358 / 8e-108 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 89 / 2e-18 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 89 / 3e-18 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002736 [exp] 83 / 6e-17 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 81 / 1e-15 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 79 / 2e-15 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 77 / 1e-14 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 77 / 2e-14 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 76 / 3e-14 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 74 / 1e-13 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10014922 [exp] 74 / 2e-13 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01637 [poplar] [flax] ATPase_2 ATPase domain predominantly from Archaea CL0361 [poplar] [flax] C2H2-zf PF02892 [poplar] [flax] zf-BED BED zinc finger
Representative CDS sequence Show only first row Show all	>Potri.001G405025.1 pacid=42789902 polypeptide=Potri.001G405025.1.p locus=Potri.001G405025 ID=Potri.001G405025.1.v4.1 annot-version=v4.1 ATGGACCAAGAGCGCCCACAAAAGAAGAGGGTTAAACATACCGATCCATTTTGGGATCATGTTGAGAAGACAAATGATAGTGATCCTTTCAAGTGCAAAT TTTGCAAATCTACATTTGCTGCGTCTACTTCAATTTCAAGGTTCAAATATCATTTGTCAGGAGAAAGTGGGAAAGGAGTTGGTATTTGTGGAAGAGTACC CGTTGATGTTAAAGAAGAAGCCTACCAAGCAATGCACAAAAAACAAAATGCCATCCCACCAATTGATCATACAGTTCCAAATGTAGAAGCTCAAAGAATA GAGCAAGAAGAGAGGGATCTCCCATATATGGCAATGGAAGATTGGACAGAGAGTACGAGATGGGAAGAGTTGGTGGTTATTAACGAAGCTGGTGGATCGA GAGGTTCTCAAGGGCAAGGAGGATATCTTTCAGACATGCTAGATACAGAAAATTTGACACAGAGCAGAACCGTGGAAGGGATTGCACTTATTGACCATGT TAGAGTTTATGAAGAGCAAGGGGCAGATGTTTCAGATGGTGGAGTGGAGAATTTGACAGACAACTTCACCAGAGGTGTGTCCATAGTTACTGACGAAAGT AGAGTTTCTGAAGGGCTTGATGGACAAAAAGCTAAAGGAGAAGCATTGCTGACAACAAAACTGGTAGGTCAGGCTTCTGACAGAAATAAGGAGATGATCT GGTCTTGGTTAATGAAGGATGACGTCTTAAGTGTTGGCGTTTATGGGATGGGCGGTGTCGGTAAAACATCATTGGCGACGCAAATCCATAATCAGCTGCT ACAACGACCAAGTTCTTTCAATTATGTTTTTTGGGTTACTGCATCACAAAATTTCACCATCAGTAAATTGCAGTATCTTATTGCCAAAGCTATTAATTTA GACCTTTCAAATGAAGAGGATGAGAATAGAAGAGCTGCAAAGTTGTCTAAAGCATTAGTTGCAAAGGGAAAGTCTGTTCTCATTCTAGATGATTTGTGGA ATCATTTTCTGCTAGAAAAGGTGGGCATACCTGTTGAAGTGAATGCGTGCAAGTTGATTCTCACAACTCGATCGTTAGAAGTTTGTCGGCGGATGGGTTG CCGAGAGATCATCAAAGTAGAGCTTCTTACTGAAGAAGAAGCTTGGACTTTGTTTGCGGAGAAACTTGGGCATGACGCAGCACTTTCTCCTGAAGTCGTA CAGATAGCAAAATCTATTGCAGCAGAATGTGCTTGTCTGCCGCTTGGGATTATAGCAATGGCCGGAAGCATGAGGGGAGTGGATGACTTGCATGAATGGA GGAATGCATTGACAGAATTGAAACAATCAGAAGTTAGGGTAGAAGACATGGAACCTGAGGTATTCCTTTAA
AA sequence Show only first row Show all	>Potri.001G405025.1 pacid=42789902 polypeptide=Potri.001G405025.1.p locus=Potri.001G405025 ID=Potri.001G405025.1.v4.1 annot-version=v4.1 MDQERPQKKRVKHTDPFWDHVEKTNDSDPFKCKFCKSTFAASTSISRFKYHLSGESGKGVGICGRVPVDVKEEAYQAMHKKQNAIPPIDHTVPNVEAQRI EQEERDLPYMAMEDWTESTRWEELVVINEAGGSRGSQGQGGYLSDMLDTENLTQSRTVEGIALIDHVRVYEEQGADVSDGGVENLTDNFTRGVSIVTDES RVSEGLDGQKAKGEALLTTKLVGQASDRNKEMIWSWLMKDDVLSVGVYGMGGVGKTSLATQIHNQLLQRPSSFNYVFWVTASQNFTISKLQYLIAKAINL DLSNEEDENRRAAKLSKALVAKGKSVLILDDLWNHFLLEKVGIPVEVNACKLILTTRSLEVCRRMGCREIIKVELLTEEEAWTLFAEKLGHDAALSPEVV QIAKSIAAECACLPLGIIAMAGSMRGVDDLHEWRNALTELKQSEVRVEDMEPEVFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10780			LRR and NB-ARC domains-contain...		Potri.001G405025 [exp]	0	1
AT2G37240			Thioredoxin superfamily protei...		Potri.008G113000 [exp]	3.46	0.9529
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G228200 [exp]	4.12	0.9547
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G284200 [exp]	6.00	0.9292
AT2G45360			Protein of unknown function (D...		Potri.014G068900 [exp]	6.92	0.9527
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283212 [exp]	6.92	0.9404
AT1G19640		JMT	jasmonic acid carboxyl methylt...		Potri.005G045900 [exp]	7.93	0.9394
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.003G132700 [exp]	8.71	0.9479
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Potri.008G073400 [exp]	8.94	0.9354
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Potri.003G106900 [exp]	10.24	0.9452	2OGox20
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283700 [exp]	14.07	0.9253

Compare expression of checked genes

Potri.001G405025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.