Plant FIBer expression Database

Potri.001G405200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G54400 397 / 6e-140 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
AT3G15530 370 / 2e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
AT1G23360 52 / 1e-07 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G128300
[exp]
512 / 0 AT5G54400 450 / 1e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Potri.008G188600
[exp]
51 / 3e-07 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038599
[exp]
414 / 2e-146 AT5G54400 455 / 8e-163 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10037890
[exp]
387 / 1e-135 AT5G54400 449 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10029124
[exp]
57 / 3e-09 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Lus10013038
[exp]
54 / 3e-08 AT1G23360 369 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF08241 Methyltransf_11 Methyltransferase domain
Representative CDS sequence
>Potri.001G405200.5 pacid=42791009 polypeptide=Potri.001G405200.5.p locus=Potri.001G405200 ID=Potri.001G405200.5.v4.1 annot-version=v4.1
ATGTCACTGGCAATCAAACCTCATCTCCACCATCACAATCACAGAATGCACAAACCCACGTCAACAAACAGCAGAGACTGGACACAGATCTACAAAATTT
ATGGCATGGAACAATGGCAAACATTACTTTTTCTCACATTTCAAGCTATTCTCTTCTCCATTTTATCAATCCTTTTCCTCCTTTACTTCCAACCAATCTG
TCAATTTCTAGACACTCTCTTCATCTTCACCCCCACCAGCTCCACCGGTGGTGGCAGTGCAGCACGTTTTGCTGCTGGATTCACCGGCTGCGTGACAGCA
CTGTCTGCTGTTTGTTTGTTTTTCGCGGCCGGGAACTTCTTTTATAGTGCTGTTGGGTTGCACTATGAAATGGCGCAAAGGATCGTGAGTTGTGTGAATG
ATTGGTCTACTGTTAAGGTTGCTCTTGATATTGGGTGCGGCCGTGGGATTTTGTTGAATGCGGTGGCTACTCAGTTGAAGAAGACAGGGAGTTCGGGTCG
GGTTGTTGGGTTGGACCGGTCTAAAAGAACTACTTTGTCTACGCTTCGAACCGCCAACATAGAAGGTGTGGGAGAGTATGTCACTTGCAGAGAGGGTGAT
GTGAGGAGTCTACCGTTTGGTGACAACTATTTTGATGTTGTGGTATCAGCTACTTTTGTACACACAGTTGGAAAAGAGTATGGCCATCGGACAGTGGAGG
CCGCAGCGGAAAGAATGAGGGTGTTGGGTGAGATGGTCAGGGTTTTGAAGCCCTGTGGTGTTGGGGTTTTGTGGGATCTACTACATGTGCCGGAATATGT
CCGCCGACTCCAAGAATTGAAGATGGAGGATATTAGGGTTTCAGAGCGGGTAACTGCCTTCATGGTGAGCAGCCACATCGTATCATTTCGGAAACCTAGT
CAGCACATGCTTGGTCCTGGTGAGGTTCGCCTGGATTGGAGGTTCTGA
AA sequence
>Potri.001G405200.5 pacid=42791009 polypeptide=Potri.001G405200.5.p locus=Potri.001G405200 ID=Potri.001G405200.5.v4.1 annot-version=v4.1
MSLAIKPHLHHHNHRMHKPTSTNSRDWTQIYKIYGMEQWQTLLFLTFQAILFSILSILFLLYFQPICQFLDTLFIFTPTSSTGGGSAARFAAGFTGCVTA
LSAVCLFFAAGNFFYSAVGLHYEMAQRIVSCVNDWSTVKVALDIGCGRGILLNAVATQLKKTGSSGRVVGLDRSKRTTLSTLRTANIEGVGEYVTCREGD
VRSLPFGDNYFDVVVSATFVHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPCGVGVLWDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPS
QHMLGPGEVRLDWRF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G54400 S-adenosyl-L-methionine-depend... Potri.001G405200
[exp]
0 1
AT4G38900 bZIP AtbZIP29 Basic-leucine zipper (bZIP) tr... Potri.009G125400
[exp]
12.92 0.6950
AT5G44670 Domain of unknown function (DU... Potri.001G074600
[exp]
13.41 0.7197
AT4G17810 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers sup... Potri.003G091200
[exp]
25.84 0.7680
AT5G43540 C2H2ZnF C2H2 and C2HC zinc fingers sup... Potri.005G221500
[exp]
38.79 0.7337
AT3G02875 ILR1 IAA-LEUCINE RESISTANT 1, Pepti... Potri.006G207300
[exp]
41.42 0.7513 ILR1.1
AT3G17650 YSL5, PDE321 pigment defective 321, YELLOW ... Potri.004G069300
[exp]
60.68 0.7366
AT1G25510 Eukaryotic aspartyl protease f... Potri.008G118100
[exp]
68.41 0.7360
AT5G41040 HXXXD-type acyl-transferase fa... Potri.015G100800
[exp]
79.49 0.7295
AT1G26150 ATPERK10 proline-rich extensin-like rec... Potri.010G132900
[exp]
80.03 0.7197
AT1G61100 disease resistance protein (TI... Potri.004G038300
[exp]
82.49 0.7290

Potri.001G405200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.