Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54380 1232 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT2G21480 790 / 0 Malectin/receptor-like protein kinase family protein (.1) AT4G39110 778 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G59700 771 / 0 Protein kinase superfamily protein (.1) AT3G46290 761 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G61350 746 / 0 Protein kinase superfamily protein (.1) AT1G30570 676 / 0 HERK2 hercules receptor kinase 2 (.1) AT5G24010 674 / 0 Protein kinase superfamily protein (.1) AT3G51550 644 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G28680 636 / 0 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G128000 [exp] 1540 / 0 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.009G026600 [exp] 831 / 0 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.001G234200 [exp] 816 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.009G120400 [exp] 806 / 0 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.015G061700 [exp] 801 / 0 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.004G158700 [exp] 784 / 0 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.016G138700 [exp] 686 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 686 / 0 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G143049 [exp] 682 / 0 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037887 [exp] 1322 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10042844 [exp] 815 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10028140 [exp] 811 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10017478 [exp] 778 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10028805 [exp] 771 / 0 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10021632 [exp] 712 / 0 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1) Lus10038595 [exp] 708 / 0 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10000562 [exp] 694 / 0 AT5G61350 965 / 0.0 Protein kinase superfamily protein (.1) Lus10014185 [exp] 660 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10027509 [exp] 654 / 0 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.001G405500.1 pacid=42792150 polypeptide=Potri.001G405500.1.p locus=Potri.001G405500 ID=Potri.001G405500.1.v4.1 annot-version=v4.1 ATGGTGAGCATGAAACTAGTGAGCTGGTTACCTGTAGTTGTTGCTTGTGTTTTATTTGAGTTCCTTGGTTATAGTGGATCATTTGCTGCATTCACTCCTC CTGATAACTACTTGGTGGCTTGTGGTTCTTCACAAAATGTCATCTTCCAAGGAAAAACTTATGTTCCTGACTCAGGGCATTCTTCTCTCACTTTAAACAC TGGAACTTCTGTTGCTGCTAAGTCCAATTCTAGTTTCCCATCTCCTATCTACCAATCTGCTCGAATTTTGTCAGGCATATCGTCTTACAAATTTGATATT AAGCAAGAAGGTAGGCATTGGATCCGTCTTTATTTTTACCCTATTCCAAACTCAGGCCAAAACTTGATGTCTGCGTCAATCACTGTAGCCACAGACGATT TTGTACTTTTGAACAATTTCACATTCAAGAACTATAATGGTTCTTACATGTTCAAGGAGTACGCAGTCAATGTGACTTCTGATACTTTGACCCTTTCCTT CATTCCTTCAAACAATTCTGTCACATTTATTAATGCAATCGAAGTTGTTTCTATCCCTGATCAAGTCTTTCCAGACCAGGCAGTAGCTATAAATCCATCT ACCCCTTTTAGTGGTCTTTCTGAACTTGCCTTCGAAACTGTTTTCCGGTTAAACACTGGAGGTCCGTTGATCACTGCAGAAAATGATACTCTTGGAAGAA TTTGGGAGAATGATGCCAAATATCTCCATGTGAACAGCTCTGCATTGAATGTTTCAGTTAACCCTGCATCCATAAGATATCCACCTGCTGTCACTACTGA AATAGCACCAAATTGGGTTTATGCCTCCGCTGATGTGATGGGAGATGCAAATGTAGCCAACATGAACTTCAACATAACTTGGGTGTTCTCTGTCAATCAA AACTTCCGCTATTTTGTGCGGGTACATTTCTGTGACATTGTGAGTAAGGCTCTGAACAATCTTGTGTTCAATCTGTACATAAATGATGATAATGCTGTTG AGAGTCTTGACCTCTCAACCTTTACCGGTGGCTTGAGTGTACCCTATTACAGAGACTTTGTCTCCAACGCATCAGTAGATTCAGATACTTTCACTGTAAG TGTTGGTCCAGATTTAACAACAGATTTGGCAAATGCAACTATGAATGGGCTGGAGATTTTCAAAATCAGTAATGAAGCTAAAAGCTTGGATGGGCTTTCA TCTGTTGAGAGCCTCCTTCCTCAATCACCATTGAAGAAAAACAAGATTGGAATTATCATTGGTTCGATTGTTGGAGCTGTGGTTGCATTTGGTTTGATTG GTCTCTGTTACTGTTGCTTGGCAGCACACAGGTCAAAGACTACTACTCACCAGGCACATCCATGGCTGCCATTGCCATTATATGGAAACTCTCAGACCAT GACCAAGATGTCCACAACTTCTCAAAAGAGTGGAACGGCAAGCTGCATCTCATTGACTTCCTCTAATCTTGGTCGGCTCTTCACATTCCAAGAAATCCTC GATGCAACGAACAAGTTCGATGAGAGCCTGCTTCTTGGGGTTGGTGGTTTTGGCAGGGTGTACAAAGGAACCGTTGAAGATGGAACCAAAGTAGCTGTCA AAAGAGGAAATCCCAGATCCGAACAAGGTCTTGCTGAATTCCGAACTGAGATTGAAATGTTATCGAAGCTTCGCCACCGTCATCTTGTCTCTCTTATTGG CTATTGTGATGAGCGGTCAGAAATGATTCTTGTCTATGAATACATGGCTAATGGACCCCTTAGGAGCCATCTATATGGAACTGATCTTCCACCTCTATCA TGGAAGCAACGACTAGAAATATGCATTGGGGCTGCCAGGGGCCTGCATTATCTCCACACAGGTGCTGCTCAAAGCATTATTCACCGAGATGTCAAGACAA CAAACATTCTGTTGGATGAAAATTTCGTGGCCAAAGTTGCTGATTTTGGCCTCTCAAAAACAGGCCCATCTCTTGATCAGACCCATGTGAGCACAGCTGT TAAGGGTAGCTTTGGTTACCTTGATCCTGAGTACTTCAGAAGGCAACAACTCACAGAGAAGTCAGATGTGTATTCATTTGGAGTGGTTCTAATGGAAGTT CTCTGCACTAGACCGGCTCTAAACCCTGTTCTCCCGAGGGAACAAGTCAATATAGCAGAGTGGGCAATGACCTGGCAGAAGAAGGGCATGTTGGATCAAA TCATGGACTCCAATCTAGCAGGTAAGGTGAATCCAGCTTCTCTCAAGAAATTTGGGGAGACAGCTGAGAAATGCCTTGCAGAGCATGGAGTTGACAGGCC ATCAATGGGAGACGTCTTATGGAATCTCGAGTATGCTCTTCAGCTTGAGGAGACCTCATCTGCACTCATGGAACCTGAAGATAACAGCACAAACCATATC CCAGGCATTCCGTTGACACCACTTGAACCATTTGATAACAGCGTAAGTATAATTGATGGAGGGAACTCTGGAACAGACGATGATGCTGAGGATGCTGCCA CTAGTGCTGTATTTTCCCAGCTAGTAAATCCTCGTGGAAGATGA
AA sequence Show only first row Show all	>Potri.001G405500.1 pacid=42792150 polypeptide=Potri.001G405500.1.p locus=Potri.001G405500 ID=Potri.001G405500.1.v4.1 annot-version=v4.1 MVSMKLVSWLPVVVACVLFEFLGYSGSFAAFTPPDNYLVACGSSQNVIFQGKTYVPDSGHSSLTLNTGTSVAAKSNSSFPSPIYQSARILSGISSYKFDI KQEGRHWIRLYFYPIPNSGQNLMSASITVATDDFVLLNNFTFKNYNGSYMFKEYAVNVTSDTLTLSFIPSNNSVTFINAIEVVSIPDQVFPDQAVAINPS TPFSGLSELAFETVFRLNTGGPLITAENDTLGRIWENDAKYLHVNSSALNVSVNPASIRYPPAVTTEIAPNWVYASADVMGDANVANMNFNITWVFSVNQ NFRYFVRVHFCDIVSKALNNLVFNLYINDDNAVESLDLSTFTGGLSVPYYRDFVSNASVDSDTFTVSVGPDLTTDLANATMNGLEIFKISNEAKSLDGLS SVESLLPQSPLKKNKIGIIIGSIVGAVVAFGLIGLCYCCLAAHRSKTTTHQAHPWLPLPLYGNSQTMTKMSTTSQKSGTASCISLTSSNLGRLFTFQEIL DATNKFDESLLLGVGGFGRVYKGTVEDGTKVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLS WKQRLEICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEV LCTRPALNPVLPREQVNIAEWAMTWQKKGMLDQIMDSNLAGKVNPASLKKFGETAEKCLAEHGVDRPSMGDVLWNLEYALQLEETSSALMEPEDNSTNHI PGIPLTPLEPFDNSVSIIDGGNSGTDDDAEDAATSAVFSQLVNPRGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.001G405500 [exp]	0	1
AT3G05910			Pectinacetylesterase family pr...		Potri.005G001500 [exp]	1.00	0.8360
AT1G64980			Nucleotide-diphospho-sugar tra...		Potri.011G117500 [exp]	23.04	0.8315
AT3G23750			Leucine-rich repeat protein ki...		Potri.018G141000 [exp]	23.45	0.7869	Pt-RHG4.1
AT5G59350			unknown protein		Potri.009G029300 [exp]	33.66	0.7509
AT2G34590			Transketolase family protein (...		Potri.004G129800 [exp]	34.59	0.8192	Pt-PDH.2
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Potri.013G003600 [exp]	35.56	0.7903
AT2G35520		DAD2	DEFENDER AGAINST CELL DEATH 2,...		Potri.001G136800 [exp]	55.09	0.8033	DAD1.2
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Potri.011G056800 [exp]	86.38	0.7704
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.001G463800 [exp]	92.08	0.7385	FAH1.2
AT5G65810		CGR3	cotton Golgi-related 3, unknow...		Potri.002G114000 [exp]	96.12	0.7696

Compare expression of checked genes

Potri.001G405500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.