Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G127800 [exp] 271 / 2e-94 ND / Potri.004G033000 [exp] 74 / 4e-17 AT1G24020 57 / 1e-10 MLP-like protein 423 (.1.2) Potri.004G032900 [exp] 72 / 2e-16 AT1G24020 59 / 2e-11 MLP-like protein 423 (.1.2) Potri.010G096000 [exp] 54 / 1e-09 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2) Potri.011G026200 [exp] 52 / 7e-09 AT1G24020 52 / 1e-08 MLP-like protein 423 (.1.2) Potri.003G088100 [exp] 52 / 7e-09 ND / Potri.011G026100 [exp] 51 / 2e-08 AT1G24020 54 / 2e-09 MLP-like protein 423 (.1.2) Potri.011G026032 [exp] 51 / 2e-08 AT1G24020 53 / 4e-09 MLP-like protein 423 (.1.2) Potri.008G212100 [exp] 50 / 3e-08 AT1G24020 50 / 6e-08 MLP-like protein 423 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027643 [exp] 139 / 3e-41 ND / Lus10036241 [exp] 70 / 6e-15 AT4G20280 188 / 1e-59 TBP-associated factor 11 (.1) Lus10018595 [exp] 55 / 8e-10 AT1G24020 63 / 4e-13 MLP-like protein 423 (.1.2) Lus10039830 [exp] 53 / 4e-09 AT1G24020 62 / 1e-12 MLP-like protein 423 (.1.2) Lus10026077 [exp] 53 / 5e-09 ND / Lus10002306 [exp] 52 / 1e-08 ND / Lus10016840 [exp] 48 / 3e-07 AT1G24020 58 / 5e-11 MLP-like protein 423 (.1.2) Lus10037715 [exp] 46 / 2e-06 AT1G24020 54 / 2e-09 MLP-like protein 423 (.1.2) Lus10030840 [exp] 45 / 2e-06 AT1G24020 189 / 2e-62 MLP-like protein 423 (.1.2) Lus10030646 [exp] 45 / 3e-06 AT1G24020 189 / 3e-62 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [poplar] [flax] Bet_v_1_like PF00407 [poplar] [flax] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Potri.001G405600.1 pacid=42792823 polypeptide=Potri.001G405600.1.p locus=Potri.001G405600 ID=Potri.001G405600.1.v4.1 annot-version=v4.1 ATGATTAAGGAAGTCAAAACTCAAGTAAATGTTGGGGTTGAGGTGGATGTCTTATGGAAAGCTTTTGGTAAGGATTTGAAGGATATTCTTCCAAAAATGA TGCCAAATTTAGTGAAGGATGCTGATATGCTTGAAGGTGACGGTGGCCTTGATACAGTCTACCTCTTTAACTTCGGCCCTGGTTTAAAAACTATGACATA CCAGAAAGAAAGGGTTACAGAGTTTGATGAGTTTGTTCATCGAATCGGGCTTGAAGTAATAGAAGGAGGGCACCTGAATCATGGTTTTTCTCATTACAAG ACAACTTTCCAGCTTACTTCAACTGGAGAGCAGGAGACCCTAATTGATGTCACAATCTCATATGAGTCTCAAGTAGAAGAAGACACCGTACCATCAAATT CAGCATCATCAACATTAGTTTTCATCAAGCACATGGAAAATTATTTGATGAATGGTGCTACTTAG
AA sequence Show only first row Show all	>Potri.001G405600.1 pacid=42792823 polypeptide=Potri.001G405600.1.p locus=Potri.001G405600 ID=Potri.001G405600.1.v4.1 annot-version=v4.1 MIKEVKTQVNVGVEVDVLWKAFGKDLKDILPKMMPNLVKDADMLEGDGGLDTVYLFNFGPGLKTMTYQKERVTEFDEFVHRIGLEVIEGGHLNHGFSHYK TTFQLTSTGEQETLIDVTISYESQVEEDTVPSNSASSTLVFIKHMENYLMNGAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.001G405600 [exp]	0	1
AT5G06070	C2H2ZnF	RAB, RBE	RABBIT EARS, C2H2 and C2HC zin...		Potri.010G199800 [exp]	1.00	0.9840
AT4G30170			Peroxidase family protein (.1)		Potri.018G089900 [exp]	1.41	0.9830
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036700 [exp]	1.73	0.9829
AT5G22860			Serine carboxypeptidase S28 fa...		Potri.010G232300 [exp]	2.82	0.9716
AT2G01900			DNAse I-like superfamily prote...		Potri.008G139600 [exp]	4.00	0.9795
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.012G071300 [exp]	6.63	0.9692
AT5G05340			Peroxidase superfamily protein...		Potri.016G132800 [exp]	6.70	0.9757	Pt-PRX1.7
AT1G05660			Pectin lyase-like superfamily ...		Potri.017G006400 [exp]	6.78	0.9587
AT2G21045			Rhodanese/Cell cycle control p...		Potri.014G131300 [exp]	7.74	0.9690
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176200 [exp]	8.12	0.9755	AOP1.1

Compare expression of checked genes

Potri.001G405600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.