Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21570 421 / 2e-149 Protein of unknown function (DUF300) (.1) AT1G11200 398 / 1e-140 Protein of unknown function (DUF300) (.1) AT1G77220 117 / 7e-30 Protein of unknown function (DUF300) (.1) AT4G38360 103 / 1e-24 LAZ1 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) AT3G05940 94 / 2e-21 Protein of unknown function (DUF300) (.1) AT5G26740 92 / 4e-21 Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2), Protein of unknown function (DUF300) (.3) AT1G23070 82 / 2e-17 Protein of unknown function (DUF300) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035900 [exp] 432 / 5e-154 AT1G11200 436 / 1e-155 Protein of unknown function (DUF300) (.1) Potri.011G044200 [exp] 427 / 4e-152 AT1G11200 395 / 1e-139 Protein of unknown function (DUF300) (.1) Potri.002G071400 [exp] 118 / 5e-30 AT1G77220 753 / 0.0 Protein of unknown function (DUF300) (.1) Potri.005G188200 [exp] 115 / 4e-29 AT1G77220 756 / 0.0 Protein of unknown function (DUF300) (.1) Potri.004G204600 [exp] 106 / 1e-25 AT4G38360 713 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.009G165600 [exp] 105 / 1e-25 AT4G38360 717 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.018G062600 [exp] 99 / 1e-23 AT1G23070 522 / 0.0 Protein of unknown function (DUF300) (.1) Potri.005G000600 [exp] 91 / 2e-20 AT3G05940 622 / 0.0 Protein of unknown function (DUF300) (.1) Potri.005G000300 [exp] 60 / 2e-10 AT3G05940 311 / 2e-105 Protein of unknown function (DUF300) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018447 [exp] 432 / 4e-154 AT4G21570 464 / 1e-166 Protein of unknown function (DUF300) (.1) Lus10011236 [exp] 172 / 3e-54 AT4G21570 216 / 1e-71 Protein of unknown function (DUF300) (.1) Lus10001058 [exp] 90 / 5e-20 AT3G05940 675 / 0.0 Protein of unknown function (DUF300) (.1) Lus10001426 [exp] 90 / 5e-20 AT3G05940 674 / 0.0 Protein of unknown function (DUF300) (.1) Lus10028621 [exp] 50 / 1e-06 AT1G77220 316 / 2e-103 Protein of unknown function (DUF300) (.1) Lus10018920 [exp] 47 / 9e-06 AT1G77220 316 / 5e-104 Protein of unknown function (DUF300) (.1) Lus10022625 [exp] 42 / 0.0002 AT4G38360 296 / 7e-102 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03619 [poplar] [flax] Solute_trans_a Organic solute transporter Ostalpha
Representative CDS sequence Show only first row Show all	>Potri.001G405700.2 pacid=42787558 polypeptide=Potri.001G405700.2.p locus=Potri.001G405700 ID=Potri.001G405700.2.v4.1 annot-version=v4.1 ATGAATCCTGGACAGCTTACTCTTCTGGCATCCACTTTCTGTGTGATGCTTACAATGCATTTTTCAGGACAGCTTCTCGCTGAGCATCTACTCAGCTGGA AGAAGCCAAAGGAGCAAAAGGCTATTATTATCATCATACTTATGGCCCCCATATATGCCATTGACTCCTTTGTTGGTTTGGTAGATTTTCAGGGGAGCAA AGCATTTTTTATGCTTTTGGAATCAGTCAAGGAATGTTACGAGGCTCTGGTGATAGCAAAGTTCTTGGCTTTGTTGTACAGCTACTTAAACATATCAATA AGCAAAAACATAGTTCCAGATGATATCAAGGGAAGGGAGATTCATCACTCATTTCCAATGACTCTTTTTCAGCCACACACTGTTCGTTTGAACCACCACA CATTAAAGCTCCTGAAGTATTGGACATGGCAGTTTGTTGTGATTCGCCCTATTTGCTCCATCTTGATGATATCTCTTCAAATTCTTGGGTTGTATTCCGG TTGGGTGAGCTGGACATTCACAATAATTCTGAATATTTCAGTATCACTGGCTTTGTATTCTCTGGTGCTTTTCTATCATGTGTTTGCTAAAGAGTTGGCG CCACACAAACCTCTTGCCAAGTTCTTGTGCATCAAAGGAATCGTCTTTTTCTGCTTTTGGCAGGGAGTTGTGCTTGATATTCTTGTAGCATTGGGCATAA TCCGATCTCATCATTTCTGGCTTGATGTAGAGCACATTGAAGAAGCTTTGCAAAATGCATTGGTGTGCTTAGAAATGGTTTTCTTTTCGGCTTTTCAGAA ATATGCATATAGTGCTACGCCATATAGAGATGATATTGCCGCAATAAATGTGAAATTGGATAGGAAGAAAGACTAG
AA sequence Show only first row Show all	>Potri.001G405700.2 pacid=42787558 polypeptide=Potri.001G405700.2.p locus=Potri.001G405700 ID=Potri.001G405700.2.v4.1 annot-version=v4.1 MNPGQLTLLASTFCVMLTMHFSGQLLAEHLLSWKKPKEQKAIIIIILMAPIYAIDSFVGLVDFQGSKAFFMLLESVKECYEALVIAKFLALLYSYLNISI SKNIVPDDIKGREIHHSFPMTLFQPHTVRLNHHTLKLLKYWTWQFVVIRPICSILMISLQILGLYSGWVSWTFTIILNISVSLALYSLVLFYHVFAKELA PHKPLAKFLCIKGIVFFCFWQGVVLDILVALGIIRSHHFWLDVEHIEEALQNALVCLEMVFFSAFQKYAYSATPYRDDIAAINVKLDRKKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21570			Protein of unknown function (D...		Potri.001G405700 [exp]	0	1
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G113466 [exp]	2.23	0.8526
AT2G28230			TATA-binding related factor (T...		Potri.006G143400 [exp]	2.44	0.8333
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G116900 [exp]	3.16	0.8341
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014382 [exp]	5.47	0.8204
AT5G19680			Leucine-rich repeat (LRR) fami...		Potri.006G163900 [exp]	8.83	0.7798
AT5G13190		AtGILP	GSH-induced LITAF domain prote...		Potri.001G061900 [exp]	9.16	0.8119
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Potri.006G108800 [exp]	9.79	0.7812	Pt-VMVSR.1
AT1G15780			unknown protein		Potri.003G025200 [exp]	10.48	0.7867
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.013G091400 [exp]	13.49	0.7774
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116210 [exp]	18.00	0.8070

Compare expression of checked genes

Potri.001G405700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.