Plant FIBer expression Database

Potri.001G406200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G13677 81 / 8e-22 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015813
[exp]
110 / 2e-33 AT3G13677 86 / 1e-23 unknown protein
Lus10036992
[exp]
105 / 1e-31 AT3G13677 81 / 1e-21 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G406200.4 pacid=42791804 polypeptide=Potri.001G406200.4.p locus=Potri.001G406200 ID=Potri.001G406200.4.v4.1 annot-version=v4.1
ATGGAGGCTATGGATACTACGACAAATACACAATCATCTACGCCTCGATGGAAACAGACGGGTAAGGAAGAGAAGACGGCAGCAGTTCATGAAGAAATGA
AGAGAATTAATCAACTCCCTGCAACCAGCACTTATGCTACTCATCGTTTGCGTGTTCTCAATAAGATCCTCCAACTTATGTCCATTAAGAGGACTGTATC
ACAAGATGAGGAATTGGAGTTACTTTTTGCTGGGTTGCATCTGTGA
AA sequence
>Potri.001G406200.4 pacid=42791804 polypeptide=Potri.001G406200.4.p locus=Potri.001G406200 ID=Potri.001G406200.4.v4.1 annot-version=v4.1
MEAMDTTTNTQSSTPRWKQTGKEEKTAAVHEEMKRINQLPATSTYATHRLRVLNKILQLMSIKRTVSQDEELELLFAGLHL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G13677 unknown protein Potri.001G406200
[exp]
0 1
Potri.014G032100
[exp]
1.00 0.8691
AT5G43150 unknown protein Potri.003G187500
[exp]
4.47 0.7884
AT4G16400 unknown protein Potri.006G017900
[exp]
6.32 0.7725
AT3G63120 CYCP1;1 cyclin p1;1 (.1) Potri.005G209800
[exp]
6.92 0.7754
AT4G32480 Protein of unknown function (D... Potri.019G074400
[exp]
7.41 0.7519
AT3G07500 FAR1_related Far-red impaired responsive (F... Potri.007G128800
[exp]
7.48 0.7203
AT5G11090 serine-rich protein-related (.... Potri.018G120300
[exp]
12.24 0.7312
AT2G44745 WRKY WRKY12 WRKY family transcription fact... Potri.002G138900
[exp]
18.97 0.7441
AT2G33310 AUX_IAA IAA13 auxin-induced protein 13 (.1.2... Potri.008G172400
[exp]
23.91 0.7017 IAA12.1
AT3G17210 ATHS1 A. THALIANA HEAT STABLE PROTEI... Potri.010G037500
[exp]
25.51 0.6879

Potri.001G406200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.