Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03610 424 / 7e-149 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G09930 396 / 8e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G36325 272 / 3e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03600 270 / 5e-89 SGNH hydrolase-type esterase superfamily protein (.1) AT5G03590 165 / 2e-49 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 127 / 1e-33 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 125 / 1e-32 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G54030 120 / 1e-30 GOLD36, MVP1 MODIFIED VACUOLE PHENOTYPE 1, GOLGI DEFECTS 36, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G14820 118 / 4e-30 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G53920 117 / 1e-29 GLIP5 GDSL-motif lipase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237000 [exp] 348 / 3e-119 AT5G03610 352 / 1e-120 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G236951 [exp] 257 / 9e-84 AT5G03610 244 / 2e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G236800 [exp] 256 / 5e-83 AT5G03610 255 / 5e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G053100 [exp] 225 / 5e-71 AT5G03610 205 / 3e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G230100 [exp] 152 / 8e-44 AT5G03610 164 / 2e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G133500 [exp] 125 / 9e-33 AT3G14225 296 / 7e-98 GDSL-motif lipase 4 (.1) Potri.007G133766 [exp] 123 / 1e-31 AT3G14225 291 / 4e-96 GDSL-motif lipase 4 (.1) Potri.008G127100 [exp] 121 / 2e-31 AT1G71120 479 / 9e-171 GDSL-motif lipase/hydrolase 6 (.1) Potri.013G065100 [exp] 120 / 4e-31 AT5G40990 375 / 4e-129 GDSL lipase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003253 [exp] 407 / 6e-142 AT5G03610 397 / 2e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10035600 [exp] 398 / 2e-138 AT5G03610 397 / 7e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028145 [exp] 248 / 8e-80 AT5G03610 234 / 2e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10042849 [exp] 240 / 8e-73 AT5G03610 240 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10043441 [exp] 198 / 3e-62 AT5G03610 201 / 1e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034139 [exp] 191 / 2e-58 AT5G03610 187 / 4e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029280 [exp] 125 / 8e-33 AT1G29670 301 / 9e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023979 [exp] 125 / 2e-32 AT5G55050 229 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003723 [exp] 124 / 2e-32 AT5G42170 308 / 1e-103 SGNH hydrolase-type esterase superfamily protein (.1) Lus10025105 [exp] 124 / 3e-32 AT5G55050 233 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G406500.1 pacid=42787568 polypeptide=Potri.001G406500.1.p locus=Potri.001G406500 ID=Potri.001G406500.1.v4.1 annot-version=v4.1 ATGGACAAACAACAAAAACTCCTCTTCCACATCTTTCTCTGCTTCTCTTTCCTTTTGCTTCTCTCAGAGAACACTAGGGTGAACGGTTCATCTCACCACC ACCACCACCACCACCACAGACATCGTCCTCTCTTCAATTTTAGACCTAGCAAGCTCTTTGTATTTGGAGACTCGTACGCAGACACAGGCAATAACAGGAA TTCTTTAGCAAGTTCATGGAAAGTTCCCTATGGAATCACATTTCCAGGCAAACCTGCCGGTCGGTTCTCAGATGGCCGTGTCTTGACTGATTTCATCGCT AAGTCTCTCGGAATCAAGTCTCCGATCCCATACAGATGGAGAAATGTGGGGATCGAGCACTGGAAAAACGGGATGAATTTCGCATATGGAGGCACTGGGG TGTTCCCTACCTTGGCTCCAGATCCGAACATGACCACACAGATTGATTTTTTCCAAGATATCATCAATAAGAAAATCTACTCTGGATCAGACCTATGTTC CTCTATGGCCCTTGTTTCCGTCGCTGGTAATGACTATTCAACTTATGCTACCACAAACGGCTCACCACAGGGCTGGCAACCTTTCATTATAGAAGTAGTG AATCAACTAGTTACGAACATGAAACGCATTCATGGCATGGGAGTGAACAAAGTGGTTGTCACCGCCCTCCAACCTCTGGGGTGTCTTCCCCGCAGCACCT TTACGTCCTCGTTCCAGCAATGTAATGGAACCGAAAACGAGCTTGTCGGTTTCCACAACCTCTTGTTGCAACAAGCAGTCACAAAGTTGAATAATGAAAC TAAGGATTCTACGTTTGCCATTCTTGATCTCTATAAGGCATTCATGGCTGTTTTCAAAATCCAAGGCAAAAATCCAGGAAGTTCGAAGTTCGGGAATCCG TTGAAGCCATGTTGCACTGGTATATCCACTGAATATGGCTGTGGAAGTGTAGATGCGAATGGAGTGAAAAAGTATGTAGTTTGTGATGATCCTGAAACTG CATTTTTCTGGGACACGGCGCACCCTACGCAGGAGGGATGGCGAGCTGTGTATTCAGCTTTGCTCCAAGAACAATAA
AA sequence Show only first row Show all	>Potri.001G406500.1 pacid=42787568 polypeptide=Potri.001G406500.1.p locus=Potri.001G406500 ID=Potri.001G406500.1.v4.1 annot-version=v4.1 MDKQQKLLFHIFLCFSFLLLLSENTRVNGSSHHHHHHHHRHRPLFNFRPSKLFVFGDSYADTGNNRNSLASSWKVPYGITFPGKPAGRFSDGRVLTDFIA KSLGIKSPIPYRWRNVGIEHWKNGMNFAYGGTGVFPTLAPDPNMTTQIDFFQDIINKKIYSGSDLCSSMALVSVAGNDYSTYATTNGSPQGWQPFIIEVV NQLVTNMKRIHGMGVNKVVVTALQPLGCLPRSTFTSSFQQCNGTENELVGFHNLLLQQAVTKLNNETKDSTFAILDLYKAFMAVFKIQGKNPGSSKFGNP LKPCCTGISTEYGCGSVDANGVKKYVVCDDPETAFFWDTAHPTQEGWRAVYSALLQEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Potri.001G406500 [exp]	0	1
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G075400 [exp]	2.44	0.8591
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073616 [exp]	4.00	0.8280
AT4G34320			Protein of unknown function (D...		Potri.004G150800 [exp]	5.19	0.7426
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073441 [exp]	10.81	0.7674
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Potri.016G059300 [exp]	12.96	0.7664
AT1G62510			Bifunctional inhibitor/lipid-t...		Potri.003G111400 [exp]	13.03	0.7560
AT5G60800			Heavy metal transport/detoxifi...		Potri.009G007600 [exp]	16.97	0.7676
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.005G225600 [exp]	16.97	0.7281
AT4G10780			LRR and NB-ARC domains-contain...		Potri.018G145568 [exp]	17.34	0.7971
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Potri.001G018300 [exp]	19.07	0.7139

Compare expression of checked genes

Potri.001G406500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.