Plant FIBer expression Database

Potri.001G406700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G54290 433 / 1e-152 CcdA cytochrome c biogenesis protein family (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038581
[exp]
424 / 7e-148 AT5G54290 381 / 6e-131 cytochrome c biogenesis protein family (.1.2)
Lus10037881
[exp]
409 / 3e-142 AT5G54290 381 / 6e-131 cytochrome c biogenesis protein family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0292 LysE PF02683 DsbD Cytochrome C biogenesis protein transmembrane region
Representative CDS sequence
>Potri.001G406700.1 pacid=42792546 polypeptide=Potri.001G406700.1.p locus=Potri.001G406700 ID=Potri.001G406700.1.v4.1 annot-version=v4.1
ATGAGCTTGCTTATAAACCACTGTGCTACTTACTGTCGTGTCAACCAGGGACGCAATAATGCAAGGAAACATAAGGCGGCAATCAGAATGAGTAGCAAAT
CCTCCAAAACGGAAGAAGATTTTGTTTCTTTATCGAAGAAGGATAGGAATTGCAGCCTTGGAATTAACACTATTATTAGTTCCATAGCAGTCTCAAATTT
GGTTGCGATAGACATGGCAAAGGCTGTAACTCTGGATAAAGTACTGGAGGAGGCTGCTTCTGTTTATACTTTGGCTGATGGAAGCATTGGGGACTGGTTT
GGAGGTTTCTTATATTCATCTGGGCAACAAGCTAATGAAGCTGTTCAAGACCAGTTATCAGCACTCAGTTTTACTAGTTTGGCAGTGATTTTTGGAGCAG
GGCTTGTAACCAGCCTTTCTCCTTGTACATTAAGTGTTTTACCGTTGACCCTTGGTTACATTGGAGCATTTGGCTCTGGAAAGAGCAGGGCAGAGATTGT
TGGGGATTCTATTGCATTTGCTTTGGGATTGGCAACTACACTAGCTCTTCTAGGCATAGCAGCCTCGTTTGCTGGAAAGACATATGGGCAGATAGGACAA
GGATTGCCCTTGGCTGCTTCTGGTCTGGCTGTTATTATGGGTCTAAATCTTCTTGAGGTTATTGAATTACAACTACCTTCCTTTTTCAACAACTTTGATC
CCCGTGCTGCTGCTGCTAATTTTCCATCAAGTGTGCAAGCATATTTAGCTGGGCTTACTTTTGCACTAGCAGCCTCACCTTGCAGTACACCTGTGCTGGC
CACTTTGCTGGGATATGTGGCTGCATCTAAGGATCCAGTCGTAGGAGGCAGCTTACTCTTAACATACACAACTGGCTATGTTGCTCCTCTACTTCTTGCA
GCTTCTTTTGCTGGAGCATTGCAGAGCTTGCTGTCATTCCGCAAGTTCTCAGCATGGATCAATCCAATGAGTGGTGCACTTTTGTTAGGAGGGGGCGTGT
ACACTTTCTTGGATAGGCTCTTCCCACCCACGATGGCAATGTAG
AA sequence
>Potri.001G406700.1 pacid=42792546 polypeptide=Potri.001G406700.1.p locus=Potri.001G406700 ID=Potri.001G406700.1.v4.1 annot-version=v4.1
MSLLINHCATYCRVNQGRNNARKHKAAIRMSSKSSKTEEDFVSLSKKDRNCSLGINTIISSIAVSNLVAIDMAKAVTLDKVLEEAASVYTLADGSIGDWF
GGFLYSSGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEIVGDSIAFALGLATTLALLGIAASFAGKTYGQIGQ
GLPLAASGLAVIMGLNLLEVIELQLPSFFNNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVVGGSLLLTYTTGYVAPLLLA
ASFAGALQSLLSFRKFSAWINPMSGALLLGGGVYTFLDRLFPPTMAM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G54290 CcdA cytochrome c biogenesis protei... Potri.001G406700
[exp]
0 1
AT5G20190 Tetratricopeptide repeat (TPR)... Potri.006G068200
[exp]
1.00 0.9701
AT2G46320 Mitochondrial substrate carrie... Potri.002G167700
[exp]
6.32 0.9476
AT2G18940 Tetratricopeptide repeat (TPR)... Potri.006G166200
[exp]
6.32 0.9619
AT3G27925 DEGP, DegP1, DE... DegP protease 1 (.1) Potri.001G348800
[exp]
6.32 0.9549
AT3G02690 nodulin MtN21 /EamA-like trans... Potri.012G145300
[exp]
7.74 0.9552
AT5G13700 ATPAO1, APAO polyamine oxidase 1 (.1) Potri.009G058200
[exp]
7.81 0.9145
AT1G32440 PKP3 plastidial pyruvate kinase 3 (... Potri.003G088700
[exp]
8.00 0.9402
AT1G04620 HCAR 7-hydroxymethyl chlorophyll a ... Potri.010G062300
[exp]
8.83 0.9338
AT1G54570 Esterase/lipase/thioesterase f... Potri.013G033600
[exp]
9.00 0.9473
AT5G06530 AtABCG22, ABCG2... Arabidopsis thaliana ATP-bindi... Potri.016G065900
[exp]
9.21 0.9399

Potri.001G406700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.