Plant FIBer expression Database

Potri.001G406900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27380 50 / 1e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038579
[exp]
109 / 2e-32 AT4G27380 50 / 8e-09 unknown protein
Lus10037879
[exp]
108 / 3e-32 AT4G27380 49 / 3e-08 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G406900.1 pacid=42789511 polypeptide=Potri.001G406900.1.p locus=Potri.001G406900 ID=Potri.001G406900.1.v4.1 annot-version=v4.1
ATGGCGAAAAACAGAAACAAGAAGAAGGAGAAGAACGGTGCCGTTTCAATGGACGTCGCAGAGCCCACTGTTTCAGATCTTCCTCAAGCGATGGACACGT
CAGAGTCTGGAGCTCAAAAATCAGCTCCTGTTACTTCTGTTAGAAAGACAAAGGGAAGACCAATGAAGAGATCAAAGAATGTTCGGAAGATGAAAGCAAT
AGCTAAAGCTATATCTAACAATGAGATAACTGTTGAGAAAGGTTTGAAGAAAGATGGTAAAACAACAAGAACTCAATCAGCAAAAAAGTTGTACGAGTGA
AA sequence
>Potri.001G406900.1 pacid=42789511 polypeptide=Potri.001G406900.1.p locus=Potri.001G406900 ID=Potri.001G406900.1.v4.1 annot-version=v4.1
MAKNRNKKKEKNGAVSMDVAEPTVSDLPQAMDTSESGAQKSAPVTSVRKTKGRPMKRSKNVRKMKAIAKAISNNEITVEKGLKKDGKTTRTQSAKKLYE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G27380 unknown protein Potri.001G406900
[exp]
0 1
AT5G55940 EMB2731 embryo defective 2731, Unchara... Potri.001G370200
[exp]
14.83 0.6831
AT1G04690 KV-BETA1, KAB1 potassium channel beta subunit... Potri.001G052100
[exp]
18.81 0.6772 Pt-KAB1.1
AT2G40660 Nucleic acid-binding, OB-fold-... Potri.019G058700
[exp]
24.45 0.6841
AT1G61700 RNA polymerases N / 8 kDa subu... Potri.006G136300
[exp]
25.09 0.6517
AT1G46264 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcr... Potri.009G068000
[exp]
41.42 0.6565
AT3G12587 Oligosaccaryltransferase (.1) Potri.008G053300
[exp]
74.48 0.6454
AT5G10780 unknown protein Potri.006G266300
[exp]
79.97 0.6241
AT3G06700 Ribosomal L29e protein family ... Potri.008G107700
[exp]
105.21 0.6332
AT3G07910 unknown protein Potri.001G277100
[exp]
153.28 0.5659
AT2G03870 EMB2816 EMBRYO DEFECTIVE 2816, Small n... Potri.009G064000
[exp]
167.14 0.6066

Potri.001G406900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.