Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54280 1512 / 0 ATMYOS1, ATM4, ATATM2, ATM2 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) AT3G19960 1273 / 0 ATM1, ATATM myosin 1 (.1.2) AT4G27370 1261 / 0 ATVIIIB, TVIIIB, VIIIB MYOSIN VIII B, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50360 1230 / 0 ATVIIIA, VIIIA MYOSIN VIII A, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G43900 611 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G17580 605 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT4G33200 595 / 0 XI-15, ATXI-I, XI-I MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) AT2G20290 594 / 0 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1) AT1G04160 592 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT2G33240 590 / 0 ATXID, XID myosin XI D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G126800 [exp] 2089 / 0 AT5G54280 1519 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Potri.007G074800 [exp] 1276 / 0 AT3G19960 1899 / 0.0 myosin 1 (.1.2) Potri.005G089200 [exp] 1270 / 0 AT3G19960 1896 / 0.0 myosin 1 (.1.2) Potri.006G220000 [exp] 621 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.013G043900 [exp] 598 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.006G145700 [exp] 595 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.009G025300 [exp] 593 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.001G233100 [exp] 592 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.001G199200 [exp] 591 / 0 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037876 [exp] 1497 / 0 AT5G54280 1383 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Lus10038576 [exp] 1486 / 0 AT5G54280 1378 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Lus10017377 [exp] 1249 / 0 AT3G19960 1806 / 0.0 myosin 1 (.1.2) Lus10013443 [exp] 1229 / 0 AT3G19960 1748 / 0.0 myosin 1 (.1.2) Lus10010173 [exp] 1029 / 0 AT3G19960 1389 / 0.0 myosin 1 (.1.2) Lus10040996 [exp] 768 / 0 AT3G19960 1049 / 0.0 myosin 1 (.1.2) Lus10032597 [exp] 607 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10023696 [exp] 592 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10003315 [exp] 586 / 0 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10022850 [exp] 584 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00063 [poplar] [flax] Myosin_head Myosin head (motor domain) CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Potri.001G407000.2 pacid=42790199 polypeptide=Potri.001G407000.2.p locus=Potri.001G407000 ID=Potri.001G407000.2.v4.1 annot-version=v4.1 ATGATGTTATCAGCATCACCAGCTGCGGTGACAAGGAGCTCTCTGGAGGAGATGCTAGATTCGCTGCGGCGACGAGATGAGGCTTTGGAGAATTCAAAGG ACCTGCCGCCCGCTTTGCCAGCACGGCCTGCTTCTAGGGCACGGCTTCCATCGGCACGCCACTCACTGCCTACAGACTTTAAAGTTGGTTCCAATGGACA AGTGGAGAGCAAAGTGGAGACAAGAGTTACTAAAGTGAAGGAGTATAATAAAAGAAAGGAGAAGGAGTTAGGGTACAAATCAGGGAGTTTTGGAAGCAAG AAAATGAGGAAAGATCAAAATTGTGTGGATTCTAATCCGTATGTAGAAGAGAATAATGAGAAAGCGAAGGGACCAGTCACGGGTTCAGTGCCAAAGGGGA AAGAGCCAGAGTGGGATGATAACATTGGTTATTTTATCAAGAAGAGGCTACGTGTCTGGTGTCGGCTCCCAAATGGGCAGTGGGGGATAGGAAAGATACA GTCAAATTCAGGGGATGAAGCAACTGTTTCACTTTCATCAGGAACTGTTATCAAAGTGTCTACAGAAGAGCTCATACCTGCAAATCCTGATGTCCTTGAG GGTGTAGATGATCTCATACAGCTTAGTTATTTAAATGAACCTTCTGTGCTTCATAATGTTAAGCACAGATATGCTCAGGATCTGATTTATAGTAAAGCAG GGCCAGTTTTGATTGCTGTCAATCCTTTTAAAGACATTCCAATTTATGGAAATGAAACCCTCACTTCTTACAAGCAGAATGCTAAGGACAGCCCTCATGT TTATGCTATAGCAGATGCTGCTTATAATGAGATGATGAGAGATGAAAAGAACCAATCCATAATCATAAGTGGTGAAAGTGGAGCTGGGAAAACTGAGACA GCAAAGTATGCTATGCAGTACTTGGCAGCTCTTGGTTGTGGCAATGATGGTATGGAGTATGAAATCCTTCAGACCAATTGTATACTTGAAGCATTTGGGA ATGCAAAAACATCCAGGAATGACAACTCTAGTAGATTTGGAAAGTTGATTGAAATTCATTTTACCGCATCAGGAAAGATTCGTGGTGCTAAAATCCAAAC TTTCCTACTCGAAAAGTCAAGAGTAGTTCAGCTTGCCAATGGTGAAAGATCATACCATATCTTCTATCAACTTTGTGCTGGTGCTCCATCGACTCTTAGA GATAGACTTAACCTTAAAATGGCCAGTGAGTACAAGTATCTTAACCAGAGTGAGTGCTTGGTAATCGACGGTGTTGATGATGGCATGAAGTTTCATAAGC TTGTGGAAGCCCTGGACACTGTTCAAATTCACAAAGAAGATCAAGAGCAGGCATTTGCAATGCTTGCTGCAGTATTATGGCTTGGAAACATTTCATTTCA AGTAATTGACAACGAAAATCATGTGGAGGCATTGGCCGATGAAGCTTTTAACAGTGCTGCCAGGCTATTAAATTGCAGTGCCCAGGATCTGATGTTGGCT CTATCAAGCCATAAAATCCAAGCTGGAAAGGATAGCATTGCTAAAAAATTGACAATGCAGCAGGCTATTGATAGAAGAGATGCATTGTCAAAGTTTATCT ATGCAGACCTGTTTGAGTGGCTTGTGGTACAAATAAACAAGTCATTTGAAGTGGGTGAACTGATGATTACTGGGAGATCCATAAGTATCCTTGATATTTA TGGATTTGAGTCATTTAAGAATAATAGCTTTGAGCAATTTTGCATAAATTATGCAAATGAGAGGCTGCAGCAACATTTCAACCGGCATCTATTTAAACTT GAGCAGCAGGAGTATGAAGAGGATGGGATTGATTGGACTAAAGTTGATTTTGAGGATAACCAAGAGTGCTTAAATCTCTTTGAGAAGAAACCTTTGGGGC TATTGTCGTTATTGGATGAGGAATCAAATTTCCCCAATGCCACTGATTTAACCTTTGCCAATAAGCTCAAGCAATATTTGAATGGTAATCCTTGCTTTAA AGGTGAAAGAGGCAGGGCTTTTGGTGTTTGTCATTACGCTGGAGAGGTTGTGTATGATACAAATGGCTTTCTGGAAAAGAACCGAGATCCAATGCACTCT GATTTCATCCAATTGCTATCATCATGTGGTTGTCAATTACTGAAATTAGCAAGTCCATCCAGCCAATTTGGTGGGTCGGAATCCTCGATGCAAAGTGTTG GCACAAAGTTCAAGAGTCAACTCTTCAAACTAATGCACCAGTTGGAGAAAACTACACCTCACTTCATTCGCTGCATAAAACCAAATGCTAAGCAGCTTCC TGGCCAGTATGAAGATGATCTTGTCTCAAAGCAACTCCGATGTTGTGGAGTTTTGGAGGTTGTGAGGATCTCAAGATCTGGATATCCTACTCGAATGACT CATCAAGAATTTGCAGGAAGGTATGGTTTCCTGCTCCCGGAGACAAATGTATCTCAGGATCCATTAAGCTTGTCAGTTGCTGTTCTCAAAAATTTTAATG TCCTCCCTGAAATGTATCAAGTTGGTTACACCAAAGTGTATCTTCGGATGGGCCAGATTGGAACATTAGAAGAGCAGAGAAAACAGTTTCTGCAAGGTAT TGTTGGGGTTCAAAAATACTTCCGTGGTGGCCAGGCCCGTCACAATTTCCATGAACTCAAACAAGGAGTGATGATATTACAATCATTTGTCCGTGGTGAA AACTTAAGAAGGAAATTCAATCACATTAAAAAGAAGTGCACAGCTAGGGCTCCCATAGCAATGGACGAGCAGCTAGTGGCAGCTGTATATTTACAATCTG TAATCCGGGGGTGGTTGGCTCGAAAGCACTTCAACAATATGCATAAAATGAAGTGGTTAATCCATGAGAATTCAAATTCTAAAAGAAAGCCAGGCAAGAA GATTTCAGAAGTGAAGGTCATACCACAAGAGCAGATTGACATTCAGACTTCAATTTTGGCAGAGCTCCAAAAAAGGGTTGTTAAAGCAGAAGCAACAATT GGGCAAAAGGAGGAGGAAAATGCTGCACTGCAAGAGCAATTACAACAGTATGAGAAAAGGTGGTCAGATTATGAGGCAAAAATGAAAGCAATGGAAGAGA TGTGGCAGATGCAGATGTTATCATTGCAAACAAGTCTTGCCGCTGCCAGAAAGAGTCTTGCTGCTGATAACACTGCAGCCCAACCTGGAAAACTTGATTC TTCTACATCACCTCGCGATTATGATTCTGAAGATAATGTTTCAATGGAATCACGAACTCCTGGTGGGAACACACCCAACATATTTGCTAATGCCTTCCCT GATTTAAGAGCAGGGAGGGAGAATAATGGCTCTGTAAATGTAGTCAACACTCTCGCAAAGGAATTTGAGCTGCAGAAACAAAATTTCGATGATGATGCCA AAGCATTAGTTGAGGTCAGGGCAGGACAATCAGCTTCCAACATGAATCCTGATGAAGAGCTTCGAAGATTGAAACTAAAGTTTGAGACTTGGAAGAAAGA CTATAAGGTTAGATTACGGGAGACAAAGGCAAGGCTTCACAAACTTGGGCATGGAGAAGTTGATAGAAATCGCCGAAAATGGTGGAGAAGATAG
AA sequence Show only first row Show all	>Potri.001G407000.2 pacid=42790199 polypeptide=Potri.001G407000.2.p locus=Potri.001G407000 ID=Potri.001G407000.2.v4.1 annot-version=v4.1 MMLSASPAAVTRSSLEEMLDSLRRRDEALENSKDLPPALPARPASRARLPSARHSLPTDFKVGSNGQVESKVETRVTKVKEYNKRKEKELGYKSGSFGSK KMRKDQNCVDSNPYVEENNEKAKGPVTGSVPKGKEPEWDDNIGYFIKKRLRVWCRLPNGQWGIGKIQSNSGDEATVSLSSGTVIKVSTEELIPANPDVLE GVDDLIQLSYLNEPSVLHNVKHRYAQDLIYSKAGPVLIAVNPFKDIPIYGNETLTSYKQNAKDSPHVYAIADAAYNEMMRDEKNQSIIISGESGAGKTET AKYAMQYLAALGCGNDGMEYEILQTNCILEAFGNAKTSRNDNSSRFGKLIEIHFTASGKIRGAKIQTFLLEKSRVVQLANGERSYHIFYQLCAGAPSTLR DRLNLKMASEYKYLNQSECLVIDGVDDGMKFHKLVEALDTVQIHKEDQEQAFAMLAAVLWLGNISFQVIDNENHVEALADEAFNSAARLLNCSAQDLMLA LSSHKIQAGKDSIAKKLTMQQAIDRRDALSKFIYADLFEWLVVQINKSFEVGELMITGRSISILDIYGFESFKNNSFEQFCINYANERLQQHFNRHLFKL EQQEYEEDGIDWTKVDFEDNQECLNLFEKKPLGLLSLLDEESNFPNATDLTFANKLKQYLNGNPCFKGERGRAFGVCHYAGEVVYDTNGFLEKNRDPMHS DFIQLLSSCGCQLLKLASPSSQFGGSESSMQSVGTKFKSQLFKLMHQLEKTTPHFIRCIKPNAKQLPGQYEDDLVSKQLRCCGVLEVVRISRSGYPTRMT HQEFAGRYGFLLPETNVSQDPLSLSVAVLKNFNVLPEMYQVGYTKVYLRMGQIGTLEEQRKQFLQGIVGVQKYFRGGQARHNFHELKQGVMILQSFVRGE NLRRKFNHIKKKCTARAPIAMDEQLVAAVYLQSVIRGWLARKHFNNMHKMKWLIHENSNSKRKPGKKISEVKVIPQEQIDIQTSILAELQKRVVKAEATI GQKEEENAALQEQLQQYEKRWSDYEAKMKAMEEMWQMQMLSLQTSLAAARKSLAADNTAAQPGKLDSSTSPRDYDSEDNVSMESRTPGGNTPNIFANAFP DLRAGRENNGSVNVVNTLAKEFELQKQNFDDDAKALVEVRAGQSASNMNPDEELRRLKLKFETWKKDYKVRLRETKARLHKLGHGEVDRNRRKWWRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Potri.001G407000 [exp]	0	1
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.001G012300 [exp]	10.09	0.7021
AT1G03520			Core-2/I-branching beta-1,6-N-...		Potri.013G145500 [exp]	10.14	0.7476
AT3G13060		ECT5	evolutionarily conserved C-ter...		Potri.001G056100 [exp]	18.24	0.7236
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Potri.004G211800 [exp]	28.98	0.6746
AT4G24015			RING/U-box superfamily protein...		Potri.003G142600 [exp]	30.82	0.6696
AT1G57560	MYB	ATMYB50	myb domain protein 50 (.1)		Potri.010G004300 [exp]	33.09	0.6830
AT1G53120			RNA-binding S4 domain-containi...		Potri.011G119800 [exp]	45.95	0.6279
AT5G02970			alpha/beta-Hydrolases superfam...		Potri.006G131300 [exp]	48.66	0.6992
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.010G130400 [exp]	49.49	0.6836	CLE12.1
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.007G097600 [exp]	65.36	0.6700

Compare expression of checked genes

Potri.001G407000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.