Plant FIBer expression Database

Pt-MRE11.1 (Potri.001G407300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-MRE11.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G54260 1054 / 0 MRE11, ATMRE11 ARABIDOPSIS MEIOTIC RECOMBINATION 11, DNA repair and meiosis protein (Mre11) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G407650
[exp]
40 / 0.0004 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038568
[exp]
1022 / 0 AT5G54260 1072 / 0.0 ARABIDOPSIS MEIOTIC RECOMBINATION 11, DNA repair and meiosis protein (Mre11) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF00149 Metallophos Calcineurin-like phosphoesterase
CL0163 PF04152 Mre11_DNA_bind Mre11 DNA-binding presumed domain
Representative CDS sequence
>Potri.001G407300.2 pacid=42792156 polypeptide=Potri.001G407300.2.p locus=Potri.001G407300 ID=Potri.001G407300.2.v4.1 annot-version=v4.1
ATGGGAGACTTGTCAAGAGATGATGATGCAAGTACGCTTCGAATACTTGTTGCAACGGATTGTCATCTAGGGTATATGGAGAAGGATGAGGTACGGCGGC
ATGATTCTTTCCAGGCTTTCGAAGAGACATGCTCCATAGCTGAGCAGAAGAAGGTGGACTTCTTACTCCTTGGCGGTGATCTGTTTCATGAGAATAAGCC
CTCAAGGTCGACATTAGTTAAGGCCATTGAGATTCTTCGCCGTCATTGCCTCAATGATCAACCAGTTCAGTTCCAAGTTGTTAGTGACCAGACTGTAAAT
TTTGCAAACGTATTTGGCCATGTAAATTATGAAGATCCACACTTCAATGTTGGCTTGCCAGTGTTCAGTATTCATGGAAATCATGATGATCCTGCTGGAG
TGGACAACTTATCTGCAGTAGATATCCTTTCAGCATGCAATCTAGTGAACTATTTTGGAAAAATGGCACTTGAGGGTTCTGGAGTGGGTCAGATCACACT
TTACCCCATCCTTGTCAGGAAGGGTTCAACAGCTGTGGCTCTTTATGGTCTTGGGAACATTCGGGATGAACGGCTTAATAGAATGTTTCAGACACCACAT
GCTGTGCAGTGGATGAGACCTGAAGCCCAAGAAGGCTGTCTAGTGTCAGACTGGTTCAACATGCTGGTACTTCATCAGAACAGAGTGAAAACAAACCCAA
AAAATGCTATAAATGAACATTTTCTACCAAGGTTCCTGGACTTTATAGTGTGGGGTCATGAACATGAATGCCTTGTTGATCCACAGGAAGTTCCAGGGAT
GGGTTTTCACATAACGCAACCAGGTTCATCAGTTGCAACATCACTGATTGATGGAGAGTCAAAGCCGAAGCATGTGCTGCTTCTAGAAATTAAGGGAAAT
CAATATCGCCCAACCAAGATACCTTTGACTTCTGTGAGGCCTTTTGAATATAAAGAGATTGTATTAAAGGATGAATCTGACATTGATCCCAATGATCAGA
ATTCAATTCTTGAACATTTAGACACAGTGGTCAGAAATCTGATAGAGAAATCTAGCAAAAAGGCTGTTAGCAGATCAGAGCTCAAGCTTCCCTTAGTTCG
GATTAAGGTAGATTACTCTGGATTTATGACAATAAATCCTCAAAGATTTGGACAGAAGTATGTGGGAAAGGTTGCAAATCCTCAAGACATACTTATTTTC
TCGAAGGCTTCTAAGAAGGGACGGAATGAAGCTAAATTCGATGATACTGAACGCCTTCGCCCAGAAGAATTAAATCAACAAAACATAGAGGCTTTAGTTG
CTGAAAATAATCTGAAAATGGAGATTCTTCCGGTCAATGATTTGGATGTTGCATTGCACAATTTTGTTAGTAAAGATGATAAGATGGCATTCTATGCTTG
CGTGCAATATAATCTTCAAGAAACACGTAGCAAAATTGCAAAAGATTCAGATACCATGAAGTTTGAAGATGAAGATCTAATTCTTAAAGTTGGAGAATGC
TTGGAGGAACGCGTCAAGGAAAGGTCTGTACACTCCACTGATGCTGCACAATTCACATCCGGTGCACAGTCCATGGAGGATTTCAGAAGTACAAGTGCTG
GAGTTGGAAGTGCTGTTTCATTTAGTGATGAGGAAGATGCAGCACAGATATCTGGCTCCACATCCACCACTAGAGGCCGAAAAGGGTCAAGAGTAGGTTC
TAGGTCATCACATGATGTGTCAGAAACTGGTAAAGGCAAAACTTCTGCAAGAGGAAGGGGAAGGGGAAGGGGTAGGGGAAGAGGCTCAAGTAACTTAAAG
CAGACAACTCTTGATGCAACTCTAGGGTTTCGCCAGTCTCAGAGGTCTGCATCAGTTTCTGCAACAGCAGCAGTTAGAAGTATTGCTGTTGAGGATGAAA
ATGTTGATTCGGCTTCAAGTGAAGATTCAAAAAAACTTGGAATGAATGAGGTTGCTGATAGCTCGAACGATGATGAGAGCATCCAAGGCAAAGGCAAAGG
ACGCAAAAGAGCTGCTGCAAGGGGAAGAGGAAGAGGTGCTACACCATCAAAGCGGGGAAGAAAATCTGAAAATTCTGCCCTTCAAAGGATGCTCATGAAC
AAGGATGATGACGACGACGATGACGACGTGACAAAGAGATTAAATAAGTCTCAACCTCGGGTAACAAGGAATTATGGTGCTTTAAGAAGGTAA
AA sequence
>Potri.001G407300.2 pacid=42792156 polypeptide=Potri.001G407300.2.p locus=Potri.001G407300 ID=Potri.001G407300.2.v4.1 annot-version=v4.1
MGDLSRDDDASTLRILVATDCHLGYMEKDEVRRHDSFQAFEETCSIAEQKKVDFLLLGGDLFHENKPSRSTLVKAIEILRRHCLNDQPVQFQVVSDQTVN
FANVFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMALEGSGVGQITLYPILVRKGSTAVALYGLGNIRDERLNRMFQTPH
AVQWMRPEAQEGCLVSDWFNMLVLHQNRVKTNPKNAINEHFLPRFLDFIVWGHEHECLVDPQEVPGMGFHITQPGSSVATSLIDGESKPKHVLLLEIKGN
QYRPTKIPLTSVRPFEYKEIVLKDESDIDPNDQNSILEHLDTVVRNLIEKSSKKAVSRSELKLPLVRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIF
SKASKKGRNEAKFDDTERLRPEELNQQNIEALVAENNLKMEILPVNDLDVALHNFVSKDDKMAFYACVQYNLQETRSKIAKDSDTMKFEDEDLILKVGEC
LEERVKERSVHSTDAAQFTSGAQSMEDFRSTSAGVGSAVSFSDEEDAAQISGSTSTTRGRKGSRVGSRSSHDVSETGKGKTSARGRGRGRGRGRGSSNLK
QTTLDATLGFRQSQRSASVSATAAVRSIAVEDENVDSASSEDSKKLGMNEVADSSNDDESIQGKGKGRKRAAARGRGRGATPSKRGRKSENSALQRMLMN
KDDDDDDDDVTKRLNKSQPRVTRNYGALRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G54260 MRE11, ATMRE11 ARABIDOPSIS MEIOTIC RECOMBINAT... Potri.001G407300
[exp]
0 1 Pt-MRE11.1
AT3G18210 2-oxoglutarate (2OG) and Fe(II... Potri.012G051200
[exp]
2.00 0.8584
AT1G55040 zinc finger (Ran-binding) fami... Potri.005G033000
[exp]
6.48 0.8124
AT3G04740 MED14, SWP, ATM... STRUWWELPETER, ARABIDOPSIS MED... Potri.013G041201
[exp]
6.92 0.8189
AT1G03610 Protein of unknown function (D... Potri.017G152601
[exp]
7.74 0.8222
AT5G22010 ATRFC1 replication factor C 1, replic... Potri.001G213900
[exp]
7.93 0.8106
AT2G39970 PXN, PMP38, APE... peroxisomal NAD carrier, perox... Potri.008G064800
[exp]
8.66 0.8024
AT3G15355 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGAT... Potri.001G400300
[exp]
9.79 0.8142
AT4G15090 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, F... Potri.003G110300
[exp]
10.58 0.8123
AT1G73875 DNAse I-like superfamily prote... Potri.012G057100
[exp]
11.48 0.8061
AT5G16715 EMB2247 embryo defective 2247, ATP bin... Potri.004G090766
[exp]
11.83 0.8168

Potri.001G407300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.