Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54250 972 / 0 HLM1, DND2, ATCNGC4 DEFENSE, NO DEATH 2, cyclic nucleotide-gated cation channel 4 (.1.2.3) AT5G15410 585 / 0 ATCNGC2, DND1 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) AT2G28260 377 / 1e-121 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT5G57940 367 / 2e-117 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT2G24610 367 / 4e-117 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT1G19780 365 / 5e-116 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT5G53130 363 / 1e-115 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT1G15990 361 / 5e-115 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT4G30360 360 / 2e-114 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT1G01340 352 / 2e-111 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G089800 [exp] 622 / 0 AT5G15410 1005 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Potri.017G089900 [exp] 566 / 0 AT5G15410 911 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Potri.009G010700 [exp] 382 / 8e-123 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G106100 [exp] 371 / 2e-118 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.018G097600 [exp] 367 / 1e-117 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.003G183000 [exp] 362 / 6e-115 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.001G043900 [exp] 360 / 4e-114 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.012G002200 [exp] 355 / 1e-112 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.015G019100 [exp] 354 / 3e-112 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004509 [exp] 956 / 0 AT5G54250 948 / 0.0 DEFENSE, NO DEATH 2, cyclic nucleotide-gated cation channel 4 (.1.2.3) Lus10030698 [exp] 559 / 0 AT5G15410 854 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Lus10005221 [exp] 483 / 2e-165 AT5G15410 680 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Lus10021461 [exp] 385 / 2e-124 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10037394 [exp] 374 / 3e-120 AT2G28260 983 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10020122 [exp] 365 / 1e-116 AT2G24610 879 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026233 [exp] 365 / 2e-116 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10042434 [exp] 365 / 6e-116 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10019983 [exp] 362 / 4e-115 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10024073 [exp] 362 / 6e-115 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Potri.001G407800.1 pacid=42790544 polypeptide=Potri.001G407800.1.p locus=Potri.001G407800 ID=Potri.001G407800.1.v4.1 annot-version=v4.1 ATGGCTAGTGAGCACCAAGAAAACTCAAATGCTGCACAGTACTTGCAGTATTTTACAGATGAAGACAGCAAAAGTGAAGAAGATGAAGGTGAAGATGATG AAGAAGAAGAAGATGTGGAGGAGGAAAGTCCACAAGATTGCAAAGGCATGTTCTTGAATCTGTGTGGTGGTGGCTCTAAAAGAAGAGGGTGGTCTCTAGG ACAGGTGTTAGACCCTAGAGGCAAATGGGTTCAGGAATGGAATAGGGTTTTTCTCCTCGTGTGTGCCACAGGACTTTTTGTGGACCCTCTCTTCTTCTAC GTCCTCTCAATAAGCGACACGTGCATGTGCCTATTCGTCGATGGGTGGTTTGCCATCACGGTCACGGCTCTCCGGTGCATGACTGATGTTTTGTACTTGT GGAACATGTGGTTGCAGCTGAAAATAGCCAAGAGACCACATGGTGGTGGTGAAAGTGGTGGAGATGGAGAAAGAGGAGGGTCCCGAGTTGCCGGCCCTTG CTCCTCGGCTCTGAGGTACTTGAAGGCTAAGAAAGGATTTTTCTTTGATCTCTTCGTTATTCTGCCTCTACCCCAGATTGTGTTATGGGTGGGAATTCCA TCTCTGTTGCAAAAGGGATCAGTAACGCTACTGATGAACGTGTTTCTGATCATTTTCCTCTTCCAATATCTCCCAAAAATACACTATTCCGTCTGCCTCC TTCGACGCATGCAAAGTCTCTCTGGCTATATATTTGGAACTGTTTGGTGGGGAATCGCTCTCAACATGATTGCTTACTTTGTTGCATCACATGCAGCAGG AGCATGTTGGTACTTGCTGGGAATTCAAAGGGCTGCAAAATGCTTGAAAGAACAATGCATAGAAACACCGGGTTGTGGCCTGGGATTGTTGTCTTGCAAA GAGCCTATTTACTATGGAACAACAAGAAAAGTGATGGAGAAGGCGAGATGGGCATGGGCGGATAACAAGCTAGCAAGATCTATGTGCTTAGACAGCCCTG ATAAATATGATTATGGTGCATATAAATGGACCGTTCAGCTTGTTACCAATGACAGCAGATTAGAGAAGATACTCTTTCCTATCTTCTGGGGCCTAATGAC TCTCAGCACTTTTGGGAACCTGGAGAGCACAACTGAGTGGTTAGAGGTTGTTTTCAACATCATTGTTCTAACGAGTGGGCTGCTCTTGGTCACCATGTTG ATTGGGAATATCAAGGTGTTCTTGCATGCAACCACATCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAATATAGAGTGGTGGATGAGGAAAAGGCACT TGCCTACGGGGTTCCGGCAGAGAGTGCGCAACTACGAGCGGCAACGGTGGGCAGCGATGAGGGGTGTTGATGAATGTGAGATGATCCGGAACCTCCCTGA GGGCCTTAGGAGGGACATCAAGTACCATCTTTGCCTGGATTTGGTGAGACAGGTACCACTGTTCCAACACATGGATGATTTGGTCCTCGAGAACATTTGT GACCGTGTGAAGTCTCTCATCTTCACAAAGGGAGAAACAATTACAAGGGAGGGAGATCCTGTCCAAAGAATGTTATTTGTAGTAAGGGGACATCTCCAAA GTAGCCAAGTTCTCAGAGACGGTGTCAAAAGCTGTTGCATGCTAGGGCCTGGGAATTTCAGTGGTGATGAGCTCTTATCATGGTGCCTGAGAAGACCCTT TATCGAACGTTTGCCACCATCTTCATCAACGTTGGTCACTCTTGAAACCACCGAGGCTTTTGGCCTAGAAGCTGAAGACGTGAAATATGTGACGCAACAT TTCAGGTACACATTCGTTAAGGAAAGAGTTAAGAGAAGCGCAAGGTATTATTCACCTGGATGGAGAACTTGGGCTGCTGTGGCTATTCAGCTGGCTTGGA GAAGGTATAAGCATCGGTTAACGCTTACCTCATTGTCATTTATAAGGCCTAGAAGACCTTTGTCAAGGTGTTCTTCTTTGGGAGAGGATAGGCTTAGGCT TTATACTGCTCTCTTAACTTCACCGAAGCCGAATCAAGAAGATTTTGACTTTTGA
AA sequence Show only first row Show all	>Potri.001G407800.1 pacid=42790544 polypeptide=Potri.001G407800.1.p locus=Potri.001G407800 ID=Potri.001G407800.1.v4.1 annot-version=v4.1 MASEHQENSNAAQYLQYFTDEDSKSEEDEGEDDEEEEDVEEESPQDCKGMFLNLCGGGSKRRGWSLGQVLDPRGKWVQEWNRVFLLVCATGLFVDPLFFY VLSISDTCMCLFVDGWFAITVTALRCMTDVLYLWNMWLQLKIAKRPHGGGESGGDGERGGSRVAGPCSSALRYLKAKKGFFFDLFVILPLPQIVLWVGIP SLLQKGSVTLLMNVFLIIFLFQYLPKIHYSVCLLRRMQSLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKEQCIETPGCGLGLLSCK EPIYYGTTRKVMEKARWAWADNKLARSMCLDSPDKYDYGAYKWTVQLVTNDSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTML IGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRHLPTGFRQRVRNYERQRWAAMRGVDECEMIRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENIC DRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLETTEAFGLEAEDVKYVTQH FRYTFVKERVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQEDFDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Potri.001G407800 [exp]	0	1
AT1G79050			recA DNA recombination family ...		Potri.001G438900 [exp]	1.41	0.9275
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.006G004300 [exp]	3.00	0.9429
AT3G05345			Chaperone DnaJ-domain superfam...		Potri.013G021000 [exp]	5.74	0.9212
					Potri.011G146000 [exp]	10.95	0.8885
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Potri.010G149500 [exp]	12.72	0.9085	Pt-SFR2.2
AT3G07700			Protein kinase superfamily pro...		Potri.014G168600 [exp]	17.94	0.9017
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Potri.005G203000 [exp]	19.36	0.8863
AT3G19900			unknown protein		Potri.010G169700 [exp]	20.61	0.9169
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.015G105100 [exp]	22.00	0.9177	Pt-CLPC.2
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.013G026600 [exp]	24.49	0.8795

Compare expression of checked genes

Potri.001G407800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.