Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54110 321 / 5e-111 ATMAMI membrane-associated mannitol-induced (.1) AT4G21450 298 / 2e-101 PapD-like superfamily protein (.1.2.3) AT4G05060 244 / 1e-80 PapD-like superfamily protein (.1) AT4G00170 67 / 7e-13 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT3G60600 56 / 3e-09 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT2G45140 51 / 2e-07 PVA12 plant VAP homolog 12 (.1) AT1G08820 50 / 1e-06 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT2G23830 47 / 1e-06 PapD-like superfamily protein (.1) AT5G47180 45 / 2e-05 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT1G51270 44 / 7e-05 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G126200 [exp] 359 / 4e-126 AT5G54110 288 / 5e-98 membrane-associated mannitol-induced (.1) Potri.011G041900 [exp] 308 / 1e-105 AT4G21450 359 / 2e-125 PapD-like superfamily protein (.1.2.3) Potri.019G116400 [exp] 290 / 6e-99 AT4G21450 270 / 1e-90 PapD-like superfamily protein (.1.2.3) Potri.004G033500 [exp] 285 / 1e-96 AT4G21450 358 / 3e-125 PapD-like superfamily protein (.1.2.3) Potri.013G147800 [exp] 282 / 1e-95 AT4G21450 266 / 5e-89 PapD-like superfamily protein (.1.2.3) Potri.002G144800 [exp] 69 / 1e-13 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.014G060900 [exp] 62 / 3e-11 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.002G144000 [exp] 58 / 1e-09 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Potri.001G152000 [exp] 57 / 1e-09 AT2G45140 296 / 6e-102 plant VAP homolog 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037873 [exp] 320 / 2e-110 AT5G54110 331 / 6e-115 membrane-associated mannitol-induced (.1) Lus10002595 [exp] 298 / 9e-102 AT4G21450 389 / 4e-137 PapD-like superfamily protein (.1.2.3) Lus10018420 [exp] 296 / 7e-101 AT4G21450 383 / 6e-135 PapD-like superfamily protein (.1.2.3) Lus10039757 [exp] 271 / 3e-91 AT4G21450 316 / 1e-108 PapD-like superfamily protein (.1.2.3) Lus10018534 [exp] 271 / 5e-91 AT4G21450 316 / 2e-108 PapD-like superfamily protein (.1.2.3) Lus10036495 [exp] 73 / 5e-15 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10010360 [exp] 72 / 2e-14 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10007463 [exp] 61 / 1e-10 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10028937 [exp] 61 / 2e-10 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10008512 [exp] 56 / 8e-09 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [poplar] [flax] PapD-like PF00635 [poplar] [flax] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Potri.001G408200.9 pacid=42788608 polypeptide=Potri.001G408200.9.p locus=Potri.001G408200 ID=Potri.001G408200.9.v4.1 annot-version=v4.1 ATGGCAATATCTGACCGACATAAAACCAACGGCGACCACAGCATGAAGCTGTTTAGGCTCTGTCCTTTCTGGCAAGCGGCAACTAACTCTTCCTCTTCGT CGTCTACACAAAACCTCAACCACAGTCATAACGGTGGCAGCAACAGTAGCCGAAGCGCGGCGGTTAATAGTAGCGGTTTGAAGTCAACGACAGTTTCTTC TGTTGCACGATCGCTTTTACCCACTCGGCGAAGGCTCCGGCTTGATCCTTCTAATAATCTCTACTTCCCTTACGAACCCGGGAAGCAAGTAAAAAGCGCA GTAAGGTTAAAAAACACAAGCAAGTCTCATGTTGCTTTTAAGTTTCAAACAACTGCACCGAAGAGCTGTTATATGCGTCCGCCCGGTGGTATTCTTGCTC CAGGAGAGAGCCTTATTGCGACGGTTTTCAAGTTTGTGGATCCACCGGAGAACAATGAAAAACAATTGGACCAGAAAAGCAAGGCTAAATTCAAGATTGT GAGTTTGAAAGTGAAGGGAGGATTGGAGTATGTGCCTGAACTGTTTGATGAACAAAAGGATCAAGTAACAGTTGAGCGAGTATTGCGGGTTGTGTTTTTA GATGCAGAGCGTCCTAGTCCTATTGTTTCTCTGAAGGCAATGGAGAAATTGAAGCGTCAATTGGCTGAAGCAGAAGCTGCTCTTGAAGTACGCAAGAAAC CTCCACCAGACACAGGCCCCCCTGTTGTTGGGGAAGGTCTTGTTATTGATGAATGGAAAGAGCGGCGAGAAAAGTACCTGGCTCGACAACAGGTTGAAGC AGTACAGTAA
AA sequence Show only first row Show all	>Potri.001G408200.9 pacid=42788608 polypeptide=Potri.001G408200.9.p locus=Potri.001G408200 ID=Potri.001G408200.9.v4.1 annot-version=v4.1 MAISDRHKTNGDHSMKLFRLCPFWQAATNSSSSSSTQNLNHSHNGGSNSSRSAAVNSSGLKSTTVSSVARSLLPTRRRLRLDPSNNLYFPYEPGKQVKSA VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVDPPENNEKQLDQKSKAKFKIVSLKVKGGLEYVPELFDEQKDQVTVERVLRVVFL DAERPSPIVSLKAMEKLKRQLAEAEAALEVRKKPPPDTGPPVVGEGLVIDEWKERREKYLARQQVEAVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54110		ATMAMI	membrane-associated mannitol-i...		Potri.001G408200 [exp]	0	1
AT2G45910			U-box domain-containing protei...		Potri.014G084900 [exp]	1.73	0.9167
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.004G197100 [exp]	2.82	0.9116
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.005G130800 [exp]	4.24	0.8920
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.016G006000 [exp]	4.89	0.9045
					Potri.012G082300 [exp]	5.47	0.8902
					Potri.003G149300 [exp]	6.00	0.8889
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.003G004200 [exp]	6.48	0.8842
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Potri.007G100600 [exp]	7.48	0.8932
AT2G19130			S-locus lectin protein kinase ...		Potri.019G119200 [exp]	8.12	0.8897
					Potri.004G212550 [exp]	8.36	0.8951

Compare expression of checked genes

Potri.001G408200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.