Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-UBP14.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20630 1236 / 0 PER1, ATUBP14, TTN6, UBP14 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) AT3G14400 49 / 1e-05 UBP25 ubiquitin-specific protease 25 (.1) AT1G04850 47 / 6e-05 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) AT1G51710 47 / 6e-05 ATUBP6, UBP6 ubiquitin-specific protease 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125800 [exp] 1419 / 0 AT3G20630 1258 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) Potri.017G056900 [exp] 49 / 1e-05 AT1G04850 577 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.001G394600 [exp] 48 / 2e-05 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.011G152500 [exp] 46 / 0.0001 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.001G316400 [exp] 46 / 0.0001 AT1G04850 581 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.001G449000 [exp] 45 / 0.0003 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.011G112800 [exp] 44 / 0.0003 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.006G185200 [exp] 44 / 0.0007 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.007G063900 [exp] 43 / 0.0008 AT2G26000 600 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037870 [exp] 1271 / 0 AT3G20630 1269 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) Lus10038564 [exp] 1140 / 0 AT3G20630 1142 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) Lus10016360 [exp] 46 / 0.0001 AT4G30890 494 / 7e-170 ubiquitin-specific protease 24 (.1.2.3) Lus10019766 [exp] 45 / 0.0002 AT4G30890 520 / 0.0 ubiquitin-specific protease 24 (.1.2.3) Lus10013726 [exp] 45 / 0.0002 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1) Lus10005591 [exp] 45 / 0.0002 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1) Lus10035825 [exp] 45 / 0.0003 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 45 / 0.0003 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10033243 [exp] 45 / 0.0003 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1) Lus10008276 [exp] 45 / 0.0003 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF00627 [poplar] [flax] UBA UBA/TS-N domain CL0229 [poplar] [flax] RING PF02148 [poplar] [flax] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G408800.1 pacid=42791301 polypeptide=Potri.001G408800.1.p locus=Potri.001G408800 ID=Potri.001G408800.1.v4.1 annot-version=v4.1 ATGGACCTGCTCCGATCAAATCTCTCACGGGTTCGGATCCCCGAACCAACTAATCGCATCTACAAGCAGGAGTGCTGCGTCTCTTTCGAAACTCCGAGGT CTGAAGGCGGGTTGTTTGTCGACATGACTACGTTTCTTGCTTTTGGGAAAGATTATGTGGGTTGGAATTATGAGAAGACTGGAAACCCGGTTTATTTACA CATAAAGCAAACAAGGAAGGTGGTCCCTGAAGATAGGCCTTTGAAGAAACCAACTCTTTTGGCTATAGGTGTTGAAGGGGGATTTGACAACAATGAACCT GAACATGAAGAAAATCACAATATAGTGATATTACCTGATTATGTTACTTTACCATTCCCTTCAGTGGAGTTGCCAGAGAAGGTGAGGTTGGCAGTTGATG CTATCATAATGGCTGAAGGTGCTGAGAGGAAAGAGCAACTTGCTGCCTGGATAGCTGCTGATAAGAAGCAAGTTAGTGCATATGCAATGAGTTTACCACA GATTGACAATGGTGTTGTTATTCCACCATCCAGGTGGAAATGTGCGAAGTGTGACAAAAAAGATAATTTGTGGCTAAATCTTACTGATGGAATGATTCTT TGTGGGCGAAAAAATTGGGATGGAACTGGAGGCAACAACCATGCCATTGAACATTACAAGGAGACAAGCTACCCTCTTGCTGTGAAGCTTGGGACAATTA CTGCTGATCTCGAAGCAGCAGATGTTTTCTCTTATCCAGAGGACGATAGTGTTGTGGACCCACTTTTAGCACAACATCTGGCATTTTTTGGCATTGATTT TTCAGCCTTACAAAAGACTGAAATGACAACTGCTGAGAGGGAACTTGACCAGAACACCAACTATGATTGGAACCGAATTCAAGAAAGTGGACAGGATGTG GAACCCATTTTTGGACCAGGTTATACAGGACTTGTGAATCTTGGAAACAGCTGCTACATGGCCGCAACGATGCAAGTTGTGTTTTCAACTCGGTCCTTCA ATTCACGATTCTACATTAACCAAAGCTTGAAAATGGCATTTGAGATGGCTCCTGCTGATCCAACTGTAGACTTGAATATGCAGCTTACAAAGCTGGCACA TGGTATGCTTTCTGGAAAGTACTCGGTTCCAGCACTGGAGAATGATGATAAAGCTAATGCCGTTACCTCAACAAGCAATAAACAGGAAGGTATACCCCCT CGTATGTTCAAAGCAGTTATTGCTGCCAGCCATCCTGAGTTTTCTTCTATGAGGCAACAGGATGCATTGGAATTCTTCCTACACTTTCTTGACCAAGTTG AGCGTGTTAATGGTGGGAAACCTGCATTGGATCCTTCAAGAAGCTTCAAGTTTGGAATTGAAGAACGTATCTCGTGTCCATCTGGAAAAGTTGGGTTCAA TAGAAGGCTTGACTATATTCTTTCTTTGAATATTCCACTACATGAAGCTACTAATAAAGAAGAACTGGAAGCCTTCGGCAAATTGAAAGCAGAAAAGACT TCTGAAGGAAAGGATTTGTCCAGTGATGAAATTGTACGTCCAAGGGTTCCCCTAGAAGCATGCCTAGCTAATTTTTCAGCCCCAGAGGAGATACAAGATT ATTATAGCACTGCCTTGAAGGCTAAGACAACAGCACTGAAGACTGCTGGTCTAACTTCATTCCCCGATTATTTGGTGTTGCACATGCGGAAATTTGTTTT GGAGGAAGGCTGGGTGCCCAAAAAGCTTGATGTCTACATAGATGTTCCTGATATCATAGACATTAGCTACATGCGAAGCAAAGGCCTTCAACCAGGGGAG GAGTTGTTACCAGATGATGTCCCTGAGGCAGAGGTGGAATCAAATATGCCTTTGGCCAACGAGGATATTGTTTCCCAGCTTGTCTCCATGGGTTTCAACT ATCTTCATTGCCAGAAAGCTGCTATAAATTCATCAAATGCTGGAGTAGAAGAGGCTATGAATTGGTTACTTTCTCACATGGATGACCCAGATATAGATGC TCCTGTTTCCCAGGGCGCACATGGTAATGAAGTCGTGGATCAATTGAAAGTTGATACTTTACTCTCATTTGGTTTTCAAGAAGAAATTGCTCGGAAGGCA CTGAAGGCTTCGGGTGGTGACATTGAAAAGGCCACTGATTGGATATTCAACAATCCTGATGCTTCTGTTTCATCTGACATGGACACTTCCACATCTAGCT CTAAACCTACTCCAGATGATACTGAGCTGCCTGATGGCGGAGGGAAATACAAACTTTTTGGGATAGTGAGCCACATGGGAACCTCCACCCACTGTGGACA CTACGTTGCTCACATACTGAAAGATGGCAGATGGGCAATCTTCAATGACAGCAAGGTTGCAGTCTCCGTAAACCTCCCCAAGGACATGGGATATTTGTAC TTCTTTGAGAGGCTTGACAGCTGA
AA sequence Show only first row Show all	>Potri.001G408800.1 pacid=42791301 polypeptide=Potri.001G408800.1.p locus=Potri.001G408800 ID=Potri.001G408800.1.v4.1 annot-version=v4.1 MDLLRSNLSRVRIPEPTNRIYKQECCVSFETPRSEGGLFVDMTTFLAFGKDYVGWNYEKTGNPVYLHIKQTRKVVPEDRPLKKPTLLAIGVEGGFDNNEP EHEENHNIVILPDYVTLPFPSVELPEKVRLAVDAIIMAEGAERKEQLAAWIAADKKQVSAYAMSLPQIDNGVVIPPSRWKCAKCDKKDNLWLNLTDGMIL CGRKNWDGTGGNNHAIEHYKETSYPLAVKLGTITADLEAADVFSYPEDDSVVDPLLAQHLAFFGIDFSALQKTEMTTAERELDQNTNYDWNRIQESGQDV EPIFGPGYTGLVNLGNSCYMAATMQVVFSTRSFNSRFYINQSLKMAFEMAPADPTVDLNMQLTKLAHGMLSGKYSVPALENDDKANAVTSTSNKQEGIPP RMFKAVIAASHPEFSSMRQQDALEFFLHFLDQVERVNGGKPALDPSRSFKFGIEERISCPSGKVGFNRRLDYILSLNIPLHEATNKEELEAFGKLKAEKT SEGKDLSSDEIVRPRVPLEACLANFSAPEEIQDYYSTALKAKTTALKTAGLTSFPDYLVLHMRKFVLEEGWVPKKLDVYIDVPDIIDISYMRSKGLQPGE ELLPDDVPEAEVESNMPLANEDIVSQLVSMGFNYLHCQKAAINSSNAGVEEAMNWLLSHMDDPDIDAPVSQGAHGNEVVDQLKVDTLLSFGFQEEIARKA LKASGGDIEKATDWIFNNPDASVSSDMDTSTSSSKPTPDDTELPDGGGKYKLFGIVSHMGTSTHCGHYVAHILKDGRWAIFNDSKVAVSVNLPKDMGYLY FFERLDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Potri.001G408800 [exp]	0	1	Pt-UBP14.2
AT4G21530		APC4	anaphase promoting complex 4, ...		Potri.004G034900 [exp]	4.47	0.8538
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.010G122866 [exp]	4.69	0.8706
AT3G04480			endoribonucleases (.1)		Potri.013G047400 [exp]	4.79	0.8888
AT1G79210			N-terminal nucleophile aminohy...		Potri.012G123100 [exp]	6.48	0.8508
AT2G40980			Protein kinase superfamily pro...		Potri.008G083300 [exp]	10.58	0.8058
AT1G17960			Threonyl-tRNA synthetase (.1)		Potri.010G096550 [exp]	30.39	0.8327
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.002G037300 [exp]	31.74	0.8265
AT1G22800			S-adenosyl-L-methionine-depend...		Potri.013G101900 [exp]	38.98	0.8192
AT4G31830			unknown protein		Potri.018G106300 [exp]	41.23	0.8423
AT1G59960			NAD(P)-linked oxidoreductase s...		Potri.010G036801 [exp]	45.51	0.8446

Compare expression of checked genes

Potri.001G408800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.