Plant FIBer expression Database

Potri.001G408900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G08240 52 / 1e-07 unknown protein
AT5G23160 48 / 3e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G071900
[exp]
69 / 3e-13 AT5G08240 92 / 2e-21 unknown protein
Potri.005G092400
[exp]
68 / 5e-13 AT5G08240 100 / 9e-25 unknown protein
Potri.013G149300
[exp]
52 / 1e-07 AT5G23160 56 / 5e-09 unknown protein
Potri.019G119000
[exp]
50 / 5e-07 AT5G08240 52 / 1e-07 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037868
[exp]
57 / 3e-09 ND 45 / 1e-05
Lus10038562
[exp]
54 / 3e-08 ND 45 / 2e-05
Lus10010194
[exp]
54 / 4e-08 AT5G23160 90 / 3e-20 unknown protein
Lus10040984
[exp]
53 / 1e-07 AT5G08240 89 / 2e-20 unknown protein
Lus10013437
[exp]
50 / 7e-07 AT5G23160 82 / 5e-18 unknown protein
Lus10017395
[exp]
49 / 1e-06 AT5G23160 83 / 6e-19 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G408900.1 pacid=42788098 polypeptide=Potri.001G408900.1.p locus=Potri.001G408900 ID=Potri.001G408900.1.v4.1 annot-version=v4.1
ATGCAGTCGACCAAGACCAAAAAAACCAACAGCAGCACTGACCAAAACAGGAAAAACAAGAACAAAAACAAGTTCTTGTTGTGTTTTAGACCAGTGGTTA
TGGACGGTCTAGAGCGACAAGGCCTTGAAGAGGGCGGGGGCCACTATGGCGGAGGAGATCCAGTTCTTAAGTGTGTCAAGTTGGAGATCAAAGACGGAGA
AGTTTTCCCTCAGATATTTCCCACCAACCTACCATCGTCAAGCAAGGAATCAACTGCTTACCCGGAAAAGAGAGGACACAAGAAGAATATTTCTCGCTTA
TTGAAGGCAATTTTGTTCGAGACATCACTGGCCAAGAAGAATAAGAAAAGGAAACTTTTGCAAAAGTTGAAACAGTCAGAAAAGGTTGAGAAAGAATCAA
ACCCAGAAAAAAACTCAGTAGATTCCAAGAATAAAGAATTGGCCAAGAAAGATGATGGAATAAATATCTCCAACAGCAACATGACTGGCTCTTCACATTC
TTCTTTATGGTCCTCGAGTTCTTCATCGCTTTCTTTAAATTCAAGGTCATTATCTGATACAAGCCGGTCATTTCGATCAAATTCATCCGAATTTAAACCC
AAGCAGGACAATATGCAAGGGAATGGAAAAGGGCATACTTCTACTATCGGTCTGTGTTTGGTTCTTGTAAGTCTCATGGTTTTGGTCTTATGGGGCAAGG
TATGTGCTATATTATGCACCTCAACATGGCTTTTCTTGGTGCCTCGTTGTTCGAAAGCCAGGATTAATAACTTATCGCAAAAGATACTTGATTATGAAGG
GATTGATTCAAAAGAGTACAAGAAGATGATTATTATGGAGGGGTTACTGGAAAGGAGCCGTAATCATGTTCTTTAA
AA sequence
>Potri.001G408900.1 pacid=42788098 polypeptide=Potri.001G408900.1.p locus=Potri.001G408900 ID=Potri.001G408900.1.v4.1 annot-version=v4.1
MQSTKTKKTNSSTDQNRKNKNKNKFLLCFRPVVMDGLERQGLEEGGGHYGGGDPVLKCVKLEIKDGEVFPQIFPTNLPSSSKESTAYPEKRGHKKNISRL
LKAILFETSLAKKNKKRKLLQKLKQSEKVEKESNPEKNSVDSKNKELAKKDDGINISNSNMTGSSHSSLWSSSSSSLSLNSRSLSDTSRSFRSNSSEFKP
KQDNMQGNGKGHTSTIGLCLVLVSLMVLVLWGKVCAILCTSTWLFLVPRCSKARINNLSQKILDYEGIDSKEYKKMIIMEGLLERSRNHVL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G08240 unknown protein Potri.001G408900
[exp]
0 1
AT2G01900 DNAse I-like superfamily prote... Potri.016G101966
[exp]
6.63 0.7457
AT4G33690 unknown protein Potri.001G287900
[exp]
8.48 0.6956
AT4G25440 C3HZnF ZFWD1 zinc finger WD40 repeat protei... Potri.012G134800
[exp]
11.40 0.6983
AT5G16110 unknown protein Potri.017G114700
[exp]
12.24 0.6674
AT1G30900 VSR6, VSR3;3, B... VACUOLAR SORTING RECEPTOR 3;3,... Potri.001G075600
[exp]
14.14 0.6614
AT3G56190 ASNAP, ALPHA-SN... alpha-soluble NSF attachment p... Potri.016G129900
[exp]
20.24 0.6744 ASNAP.2
AT4G20400 PKDM7B, JMJ14 JUMONJI 14 (.1.2) Potri.001G440900
[exp]
31.40 0.6280
AT2G27600 ATSKD1, VPS4, S... VACUOLAR PROTEIN SORTING 4, SU... Potri.004G184500
[exp]
31.46 0.6250
AT2G41690 HSF AT-HSFB3, HSFB3 HEAT SHOCK TRANSCRIPTION FACTO... Potri.016G056500
[exp]
32.18 0.6363 HSFB3.2
AT4G10925 Nuclear transport factor 2 (NT... Potri.001G089600
[exp]
34.95 0.6371

Potri.001G408900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.