Plant FIBer expression Database

Potri.001G408950 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27340 71 / 1e-15 Met-10+ like family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G125700
[exp]
92 / 5e-23 AT4G27340 720 / 0.0 Met-10+ like family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037871
[exp]
67 / 4e-14 AT4G27340 733 / 0.0 Met-10+ like family protein (.1)
PFAM info
Representative CDS sequence
>Potri.001G408950.1 pacid=42789424 polypeptide=Potri.001G408950.1.p locus=Potri.001G408950 ID=Potri.001G408950.1.v4.1 annot-version=v4.1
ATGCATTCAGGGGTATTCAAGGATAAACCCAAGGATAGAGAATTTGCCTTGCCAGTGATCCATGTTTATGGATTCACCAGAGCTCGTGATCCAGAATCTG
ATTTCCACGAGCGGATAAGGATTGCATTGCAAGAGGCGGAAGTTGATGTAGAAATGCGTCTGGATCTGGAAAATGGATGTTGTGTGCATCATTTAGACTT
TCCTATGAGTGCAGCATATGCAAGTGGATCAAATTTAAATTTGTGTATCCATTTTTATTTTCAAATATATGACATATAG
AA sequence
>Potri.001G408950.1 pacid=42789424 polypeptide=Potri.001G408950.1.p locus=Potri.001G408950 ID=Potri.001G408950.1.v4.1 annot-version=v4.1
MHSGVFKDKPKDREFALPVIHVYGFTRARDPESDFHERIRIALQEAEVDVEMRLDLENGCCVHHLDFPMSAAYASGSNLNLCIHFYFQIYDI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G27340 Met-10+ like family protein (.... Potri.001G408950
[exp]
0 1
AT1G03910 unknown protein Potri.001G242900
[exp]
12.08 0.9106
AT1G61140 EDA16 embryo sac development arrest ... Potri.004G037700
[exp]
12.12 0.8652
Potri.018G013875
[exp]
16.06 0.8208
AT4G24160 alpha/beta-Hydrolases superfam... Potri.005G235200
[exp]
17.32 0.8812
AT5G03980 SGNH hydrolase-type esterase s... Potri.005G024966
[exp]
21.33 0.8449
AT1G04635 EMB1687 EMBRYO DEFECTIVE 1687, ribonuc... Potri.015G001200
[exp]
21.77 0.8068
Potri.002G020750
[exp]
22.71 0.8810
AT1G01490 Heavy metal transport/detoxifi... Potri.001G099500
[exp]
26.58 0.8386
Potri.018G013850
[exp]
27.65 0.8097
AT5G16460 Putative adipose-regulatory pr... Potri.013G085850
[exp]
28.72 0.8803

Potri.001G408950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.