Plant FIBer expression Database

Potri.001G409000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G125600
[exp]
397 / 4e-139 AT4G27330 / NOZZLE, sporocyteless (SPL) (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08744 NOZZLE Plant transcription factor NOZZLE
Representative CDS sequence
>Potri.001G409000.1 pacid=42793402 polypeptide=Potri.001G409000.1.p locus=Potri.001G409000 ID=Potri.001G409000.1.v4.1 annot-version=v4.1
ATGGCTACTTCACTTTCACTTTTTCTCATGCCTAGCGATGATAGAAAACAAGAGTCCACCCTGGCCATAAGTACCGAACCAGCTGAACCCACAAGAACTA
CTACTACTACTCGGACCAGAAAGCCTGCTGCCAACAAATGTCAAACTCGCAAGAAACAACCTCGAAGAGGTATGGGAGTAGCTCAACTTGAGAATCTAAG
GATTCAAGAAAGATGGAAGGCAATTACTGAGACTAAGCAAATTGGGTCTCTCAATCTCCAACCCACCAAGCAGCTGCACGTTTTTGACCCGTTTAATAAT
AATAATGATGATAATCAAATGGCGCAGTATGGTACTACAGTTAACCATGGTGTGCCAATGAGAAATAATGGTGTTGTTTTTAATGGGTTCTTGGGTTGGG
ATCACCAGGGAGGTGTGGTGGTTAAGAGGGTTGATGAGTTTAATGCAAATAATAATGGTGGGTTTGGGTGCCAGGTTTTGGTTAACCCGTACATGGTTGG
ATCAGCTCCGGTTCATCAGGCTGGGGCTCCAGCTCCAGCTCCTGCTGCTGCAGTACTGCTTGAGGCTTCGAAAGAGCTCTCTTCAATCCCAAAAGTAATG
CAGCAGCAGAAGCAATATGAGCCTACTCGTTGTGATCTTTGCTTTAAGATGGGAGGATTCAGTGCCAGAGCTGCAACGAGTGCTTTCTATGCCAAATATC
ACAACCACAACAACAACGAGGGTGTAGAGGCGATGGAAGCACACAGGAAGGGTAATAACGCAATGGGTAGTAAAGTTATCATGGAATATGAACTTTTCCC
TGGAAAAAATGGTAAAAGCACCTGTTTCAAGGATATGGAATTTCCTACTGCAGAAGCTTCAGTTGCAGTGGGTACTGGTGAAGCTTCTTGTGTCACAACT
TATTCTGATTACAGTGCATCTGATGCTTCTAATTCTATTGATTTGTCTCTGAAGCTTTCATGTTAG
AA sequence
>Potri.001G409000.1 pacid=42793402 polypeptide=Potri.001G409000.1.p locus=Potri.001G409000 ID=Potri.001G409000.1.v4.1 annot-version=v4.1
MATSLSLFLMPSDDRKQESTLAISTEPAEPTRTTTTTRTRKPAANKCQTRKKQPRRGMGVAQLENLRIQERWKAITETKQIGSLNLQPTKQLHVFDPFNN
NNDDNQMAQYGTTVNHGVPMRNNGVVFNGFLGWDHQGGVVVKRVDEFNANNNGGFGCQVLVNPYMVGSAPVHQAGAPAPAPAAAVLLEASKELSSIPKVM
QQQKQYEPTRCDLCFKMGGFSARAATSAFYAKYHNHNNNEGVEAMEAHRKGNNAMGSKVIMEYELFPGKNGKSTCFKDMEFPTAEASVAVGTGEASCVTT
YSDYSASDASNSIDLSLKLSC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G27330 NZZ NZZ, SPL NOZZLE, sporocyteless (SPL) (.... Potri.001G409000
[exp]
0 1
AT5G23280 TCP TCP7 TCP family transcription facto... Potri.009G009400
[exp]
2.44 0.7051
Potri.006G229050
[exp]
3.46 0.6678
AT1G55540 EMB1011 Nuclear pore complex protein (... Potri.001G001201
[exp]
5.47 0.5527
AT5G16920 Fasciclin-like arabinogalactan... Potri.016G009000
[exp]
11.22 0.5384
AT3G55550 Concanavalin A-like lectin pro... Potri.006G252732
[exp]
17.32 0.4840
AT3G04280 ARR22 response regulator 22 (.1.2.3) Potri.003G172750
[exp]
27.45 0.4805
AT1G57775 Protein of unknown function (D... Potri.004G114901
[exp]
27.98 0.4798
AT1G79400 ATCHX2 cation/H+ exchanger 2, cation/... Potri.003G194100
[exp]
46.66 0.4170 ATCHX1.2
AT5G37820 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINS... Potri.017G128200
[exp]
52.47 0.4348
Potri.004G046201
[exp]
54.11 0.4880

Potri.001G409000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.