Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PLIN-GEN.26
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54570 790 / 0 BGLU41 beta glucosidase 41 (.1) AT1G26560 624 / 0 BGLU40 beta glucosidase 40 (.1) AT3G18080 508 / 3e-177 BGLU44 B-S glucosidase 44 (.1) AT5G36890 491 / 9e-171 BGLU42 beta glucosidase 42 (.1.2) AT3G18070 489 / 5e-170 BGLU43 beta glucosidase 43 (.1.2) AT5G24550 462 / 6e-159 BGLU32 beta glucosidase 32 (.1) AT2G44450 451 / 6e-155 BGLU15 beta glucosidase 15 (.1) AT2G44480 451 / 1e-154 BGLU17 beta glucosidase 17 (.1.2) AT5G42260 449 / 3e-154 BGLU12 beta glucosidase 12 (.1) AT5G44640 449 / 5e-154 BGLU13 beta glucosidase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094200 [exp] 618 / 0 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.010G159900 [exp] 606 / 0 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.T085301 [exp] 502 / 6e-175 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 502 / 7e-175 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.010G178800 [exp] 500 / 3e-174 AT5G36890 714 / 0.0 beta glucosidase 42 (.1.2) Potri.015G041300 [exp] 494 / 2e-171 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.004G040700 [exp] 493 / 2e-171 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.002G219600 [exp] 493 / 2e-171 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Potri.004G109166 [exp] 492 / 9e-171 AT5G42260 525 / 0.0 beta glucosidase 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009218 [exp] 784 / 0 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10037988 [exp] 775 / 0 AT5G54570 741 / 0.0 beta glucosidase 41 (.1) Lus10037987 [exp] 697 / 0 AT5G54570 662 / 0.0 beta glucosidase 41 (.1) Lus10036885 [exp] 613 / 0 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10037098 [exp] 612 / 0 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10004654 [exp] 593 / 0 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10031235 [exp] 532 / 0 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 513 / 5e-179 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031251 [exp] 509 / 2e-177 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10031808 [exp] 504 / 1e-175 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.001G409900.1 pacid=42788681 polypeptide=Potri.001G409900.1.p locus=Potri.001G409900 ID=Potri.001G409900.1.v4.1 annot-version=v4.1 ATGTTGAAATCTTTCTTGATCACCATGACTAATATCATACTGCTCCTGATCGTGATCTTCTTAACAACATGCCTTTTTGTAAACTCAAAACCTATTAGCA GGGCTGATTTTCCTGGTGGCTTCACATTTGGGACTGCCTCTTCTGCTTATCAGTTTGAAGGAGCCGTGAATGAAGGAAACAAGGGAGATAGCATATGGGA TACCTTCACAAGGCAACCAGGAAGGATATTGGACCTCAGCAATGCAGATACAGCAGTTGATCAATATCACCGGTTTAAGGGGGATATAGATTTGATGAAG GATTTAGGAATGGATGCCTACAGATTCTCAATATCTTGGCCAAGAATCTTTCCAAATGGAACAGGGGTGCCGAACCAAGAAGGGATAGATTACTACAGCT GCCTCATAGATACTTTGCTAGAAAAAGGAATCCAGCCTTATGTAACTCTATATCATTGGGATCTTCCACAGATGCTTGAAGATAAATATGAAGGATGGTT GAGCAAACAAATTGTAGAGGACTTCGAGCATTATGCCTTCACTTGCTTCCAAGCTTTTGGAGACAGAGTGAAACACTGGATCACTTTCAACGAACCTCGT GGTTTCTCAATTCAGGGTTACGATACCGGTATTCAGGCTCCTGGAAGGTGCTCTATTATGGGCCATTTTCTTTGTAAGAGGGGGAATTCATCCTCTGAGC CATACATGGTAGCTCACAACATCCTTTTGTCACATGCCGCTGCTTATCGTTGTTACCAGTTACATTTCAAGGGAAAACAAGGAGGTCAGATTGGAATAAC ATTAGATTCCAAGTGGTATGAACCAATATCTGACGCTGAAGAGGACAAAGATGCGGCACAAAGAGCAATGGATTTTGCAATTGGATGGTTCCTTGATCCA CTTTTCCTTGGAAAATATCCTCTCTCAATGAAAAAGCTTGTGGGGGAAAGACTACCTGAGATCTCTCAAGGGATGTCGAAACTCCTAGTTGGTTCTTTGG ACTTCGTTGGCATAAATCATTACACAACACTATATGTTCGGAATGACAGGACAAGGATTCGGAAACTAATATTGCAGGACGCATCGTCCGACGCTGCTGT GATTACTACCTCTTATCGGCGTGGGGTTGCAATCGGAGAACGAGCAGCTTCCCGCTGGCTGCACATTGTCCCATGGGGCATCCACAGGTTGCTCAAATAC GTGAAAGATAAGTATGGGAACCCACCAGTGATTATAACAGAAAATGGAATGGATGATCTGAATACGCCGTTCATATCTTTAAACAAGGCCTTGCAGGACG ACAAGAGAATAGAATACCACAGGGACTATCTCTCCAACATCTCTGCAGCTATAAGGCAAGACAATTGTGATGTTCGAGGTTATTTTGCGTGGTCTTTGCT GGACAACTGGGAATGGAACTCAGGCTACACCGTGCGGTTTGGACTCTACTTTGTGGATTACAGAAACAACCTTACAAGGGTACCAAAAGCTTCTGCTGAA TGGTTCAAAAGAACACTCAGATTAGAAGATAACCTGCAAAGCCAATTGTAA
AA sequence Show only first row Show all	>Potri.001G409900.1 pacid=42788681 polypeptide=Potri.001G409900.1.p locus=Potri.001G409900 ID=Potri.001G409900.1.v4.1 annot-version=v4.1 MLKSFLITMTNIILLLIVIFLTTCLFVNSKPISRADFPGGFTFGTASSAYQFEGAVNEGNKGDSIWDTFTRQPGRILDLSNADTAVDQYHRFKGDIDLMK DLGMDAYRFSISWPRIFPNGTGVPNQEGIDYYSCLIDTLLEKGIQPYVTLYHWDLPQMLEDKYEGWLSKQIVEDFEHYAFTCFQAFGDRVKHWITFNEPR GFSIQGYDTGIQAPGRCSIMGHFLCKRGNSSSEPYMVAHNILLSHAAAYRCYQLHFKGKQGGQIGITLDSKWYEPISDAEEDKDAAQRAMDFAIGWFLDP LFLGKYPLSMKKLVGERLPEISQGMSKLLVGSLDFVGINHYTTLYVRNDRTRIRKLILQDASSDAAVITTSYRRGVAIGERAASRWLHIVPWGIHRLLKY VKDKYGNPPVIITENGMDDLNTPFISLNKALQDDKRIEYHRDYLSNISAAIRQDNCDVRGYFAWSLLDNWEWNSGYTVRFGLYFVDYRNNLTRVPKASAE WFKRTLRLEDNLQSQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Potri.001G409900 [exp]	0	1	PLIN-GEN.26
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Potri.007G081000 [exp]	4.12	0.8773	SK3
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Potri.011G044500 [exp]	7.34	0.8412	BFN1.1
AT1G13340			Regulator of Vps4 activity in ...		Potri.010G127000 [exp]	7.48	0.8442
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Potri.015G142000 [exp]	12.40	0.8522
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Potri.003G114100 [exp]	14.96	0.8307	MYB85.1
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Potri.016G111000 [exp]	15.96	0.8438
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155200 [exp]	17.40	0.8460
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.002G233400 [exp]	23.36	0.8373	Pt-RIC2.2
AT5G15790			RING/U-box superfamily protein...		Potri.017G100100 [exp]	23.95	0.8144
AT5G50230			Transducin/WD40 repeat-like su...		Potri.015G087200 [exp]	24.49	0.7842

Compare expression of checked genes

Potri.001G409900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.