Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54540 121 / 4e-32 Uncharacterised conserved protein (UCP012943) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130000 [exp] 414 / 4e-146 AT5G54540 111 / 3e-28 Uncharacterised conserved protein (UCP012943) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014803 [exp] 215 / 7e-68 AT5G54540 139 / 8e-39 Uncharacterised conserved protein (UCP012943) (.1) Lus10003594 [exp] 198 / 3e-61 AT5G54540 117 / 2e-30 Uncharacterised conserved protein (UCP012943) (.1) Lus10028185 [exp] 44 / 0.0001 AT2G44970 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033283 [exp] 42 / 0.0005 AT1G79450 447 / 3e-158 ALA-interacting subunit 5 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G410100.1 pacid=42788100 polypeptide=Potri.001G410100.1.p locus=Potri.001G410100 ID=Potri.001G410100.1.v4.1 annot-version=v4.1 ATGGGAGGAGGAGGAGCGATGAGAGCTGCGGCTAAGGTGGCTGGAATTGGAGTGGTTAACTCCGGGATCCGTGGCGGCATCTCTTGTGTTCCTCCATCGG TGGAGCAGTCGGTGCGCAATGCTTCCCGTCCTGTTTCGGCGATCATATCGTCCACGCCGAGTGGAGGTGAGGTTGCGGCGACGGTGCAGAGGCCTTCGTG GGAGTTGGATGAGTGGGAGTTCGCTGGTGGCTTGGAAGAGGAGACGGTTGTGCATTCGGCTGAGCCTGTGGCTAGAGTTGTTTTCGGTGGTGCACCGCCG AGTTTGCAGGAGGCTGAGGCAGCTACTTTTGAATTGAATGATGCTTTCCAAAAAGTATATCTGTCGTCTCCGAACTCAGGAACTGGCAGTTCAGTTGGAG GTAGTCAGTTGTCTGGCCTCCCTTTGCTTAGAAAATCTGAGTCTTTGGAAACTAAAGATTGTATTCCCTGTGACCCAACTGGAGCTCCTGTGCCAAAATA TGCTATGCAGGCATTTTCATTGCTTAATGAAAGTCCTAAAATTCAGACTGTTGTTGCTGCCGTTGCCTCTGACCCAAATGTCTGGAATGCAGTTTGGGAG AACGAAGCCCTTCAGGATTTCCTCCAGTCCCAGAATACCTATACCCAGTCATCTGAAGCCAAGGAGTTTGTCAGAGATACCGACTTTCAGGATGCAGTAT CTTCTAAGAACCTCGCTGAATTATCTGATGATGAAAGTGAAGCTGGAAGCTCTCAAACTGAACTCGTGGATATTATCAATAACGTCAAGCTTACTGTGGT TGACTTGGTGACCAACTTATCTGCTTACTTCCAAAAGATTTTTAGCTTTTCATCTGCAGAGCACACTCCTGCTGCCAATGAAAGTGCTGGAGCAGCTACC ATCGAAAAGACCATAGGAGCATCTCTCATGGGACTGGCAGTGATTGTTATTATGGTGGTTGTGCTGAGGCGCCCTTAA
AA sequence Show only first row Show all	>Potri.001G410100.1 pacid=42788100 polypeptide=Potri.001G410100.1.p locus=Potri.001G410100 ID=Potri.001G410100.1.v4.1 annot-version=v4.1 MGGGGAMRAAAKVAGIGVVNSGIRGGISCVPPSVEQSVRNASRPVSAIISSTPSGGEVAATVQRPSWELDEWEFAGGLEEETVVHSAEPVARVVFGGAPP SLQEAEAATFELNDAFQKVYLSSPNSGTGSSVGGSQLSGLPLLRKSESLETKDCIPCDPTGAPVPKYAMQAFSLLNESPKIQTVVAAVASDPNVWNAVWE NEALQDFLQSQNTYTQSSEAKEFVRDTDFQDAVSSKNLAELSDDESEAGSSQTELVDIINNVKLTVVDLVTNLSAYFQKIFSFSSAEHTPAANESAGAAT IEKTIGASLMGLAVIVIMVVVLRRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54540			Uncharacterised conserved prot...		Potri.001G410100 [exp]	0	1
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.005G246000 [exp]	16.97	0.6749
AT4G32480			Protein of unknown function (D...		Potri.019G099600 [exp]	23.06	0.6593
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Potri.012G119200 [exp]	30.33	0.6253
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.015G094700 [exp]	33.46	0.6323
AT5G47610			RING/U-box superfamily protein...		Potri.001G453800 [exp]	49.14	0.6363
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.010G127600 [exp]	49.74	0.6401
AT3G25620		ABCG21	ATP-binding cassette G21, ABC-...		Potri.010G131900 [exp]	54.99	0.5971
AT5G42200			RING/U-box superfamily protein...		Potri.005G244500 [exp]	56.78	0.6234
AT3G14130			Aldolase-type TIM barrel famil...		Potri.003G069400 [exp]	58.63	0.6332
AT3G60640		ATG8G	AUTOPHAGY 8G, Ubiquitin-like s...		Potri.002G144600 [exp]	58.97	0.5836

Compare expression of checked genes

Potri.001G410100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.