Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54530 179 / 3e-58 Protein of unknown function, DUF538 (.1) AT1G61667 155 / 5e-49 Protein of unknown function, DUF538 (.1) AT3G07470 117 / 1e-33 Protein of unknown function, DUF538 (.1) AT3G07460 114 / 1e-32 Protein of unknown function, DUF538 (.1.2) AT5G16380 99 / 2e-26 Protein of unknown function, DUF538 (.1) AT1G55265 95 / 5e-25 Protein of unknown function, DUF538 (.1) AT5G19860 79 / 8e-19 Protein of unknown function, DUF538 (.1) AT4G02360 49 / 2e-07 Protein of unknown function, DUF538 (.1) AT1G02816 44 / 7e-06 Protein of unknown function, DUF538 (.1) AT4G02370 44 / 1e-05 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G129900 [exp] 291 / 1e-102 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1) Potri.011G032600 [exp] 168 / 7e-54 AT1G61667 177 / 1e-57 Protein of unknown function, DUF538 (.1) Potri.004G029600 [exp] 163 / 5e-52 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Potri.002G238900 [exp] 120 / 1e-34 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 118 / 6e-34 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 102 / 4e-28 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 99 / 8e-27 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 92 / 5e-24 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 91 / 2e-23 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018396 [exp] 181 / 4e-59 AT1G61667 176 / 5e-57 Protein of unknown function, DUF538 (.1) Lus10007617 [exp] 177 / 3e-57 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Lus10020075 [exp] 153 / 6e-48 AT1G61667 178 / 6e-58 Protein of unknown function, DUF538 (.1) Lus10006749 [exp] 140 / 3e-43 AT1G61667 171 / 2e-55 Protein of unknown function, DUF538 (.1) Lus10019216 [exp] 120 / 1e-34 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1) Lus10029538 [exp] 117 / 2e-33 AT3G07470 192 / 5e-63 Protein of unknown function, DUF538 (.1) Lus10039620 [exp] 117 / 5e-33 AT3G07470 181 / 4e-58 Protein of unknown function, DUF538 (.1) Lus10038238 [exp] 110 / 8e-31 AT3G07460 162 / 4e-51 Protein of unknown function, DUF538 (.1.2) Lus10025861 [exp] 110 / 2e-30 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10004300 [exp] 103 / 1e-28 AT3G07470 158 / 4e-50 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [poplar] [flax] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Potri.001G410300.1 pacid=42792311 polypeptide=Potri.001G410300.1.p locus=Potri.001G410300 ID=Potri.001G410300.1.v4.1 annot-version=v4.1 ATGGCCATCTTTAACACCAGGACCAGAATAGTCTTTTTCTGCACACTAAGCTTGCTCGTCCTTTTCTCTCCACGGCTCTCTTTCTCCTCTTCAATCCATG ACCTTCTTATCTCAAAGGGGTTACCAGCTGGTCTCCTCCCCAAAGAAGTCAAGTCCTACACCCTGTCTGAAGATGGCTACTTAGAGGTGTTCCTTGATGG TCCATGCTTGACCAAGTATGAGAATAGGGTCTTCTTTGAAAGCGTAGTGAGGGCTAATCTCACTTATCGTAGTCTCTCAGGGGTTGTCGGTTTGTCTCAA GAAGAACTCTTTCTTTGGCTACCAGTTAAAGATATCATAGTTGATGATCCAGGATCAGGACTTATTTTGTTTGACATTGGGGTTGCTCATAAGCAACTTT CTTTATCACTCTTTGAAGATCCACCAAATTGTAAGCCTCAAGGTGGTGAGTTGAAGAATCATGCGAGGAAGGAGAAAGGGTTCGCGGCAGTGAGATAG
AA sequence Show only first row Show all	>Potri.001G410300.1 pacid=42792311 polypeptide=Potri.001G410300.1.p locus=Potri.001G410300 ID=Potri.001G410300.1.v4.1 annot-version=v4.1 MAIFNTRTRIVFFCTLSLLVLFSPRLSFSSSIHDLLISKGLPAGLLPKEVKSYTLSEDGYLEVFLDGPCLTKYENRVFFESVVRANLTYRSLSGVVGLSQ EELFLWLPVKDIIVDDPGSGLILFDIGVAHKQLSLSLFEDPPNCKPQGGELKNHARKEKGFAAVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54530			Protein of unknown function, D...		Potri.001G410300 [exp]	0	1
AT1G23890			NHL domain-containing protein ...		Potri.004G087300 [exp]	4.89	0.6989
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Potri.013G130400 [exp]	5.29	0.7158
AT1G22460			O-fucosyltransferase family pr...		Potri.002G100400 [exp]	7.41	0.6970
AT5G41800			Transmembrane amino acid trans...		Potri.003G138100 [exp]	11.22	0.7295
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.011G007600 [exp]	14.38	0.7050
AT2G35760			Uncharacterised protein family...		Potri.006G016900 [exp]	24.16	0.6772
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.009G014500 [exp]	26.64	0.6738	Pt-HB1.8
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Potri.010G031000 [exp]	28.98	0.6870
AT5G12300			Calcium-dependent lipid-bindin...		Potri.001G275800 [exp]	36.02	0.6694
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.002G123500 [exp]	41.43	0.6522

Compare expression of checked genes

Potri.001G410300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.