Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54520 510 / 4e-180 Transducin/WD40 repeat-like superfamily protein (.1) AT1G10580 186 / 4e-53 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 100 / 3e-23 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 97 / 6e-22 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 91 / 3e-20 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G43920 63 / 2e-10 transducin family protein / WD-40 repeat family protein (.1) AT2G16780 61 / 7e-10 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT5G08560 61 / 9e-10 transducin family protein / WD-40 repeat family protein (.1.2) AT4G28450 60 / 1e-09 nucleotide binding;protein binding (.1) AT5G67320 59 / 3e-09 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G064600 [exp] 188 / 1e-53 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G172800 [exp] 185 / 2e-52 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 98 / 1e-22 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 97 / 4e-22 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 79 / 4e-16 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 76 / 2e-14 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.007G009500 [exp] 72 / 1e-13 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G194100 [exp] 66 / 3e-11 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G055800 [exp] 64 / 1e-10 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014805 [exp] 449 / 1e-158 AT5G54520 403 / 2e-140 Transducin/WD40 repeat-like superfamily protein (.1) Lus10030869 [exp] 184 / 5e-52 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10030620 [exp] 175 / 7e-49 AT1G10580 926 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 89 / 4e-19 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 87 / 9e-19 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 87 / 1e-18 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 84 / 2e-17 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 84 / 2e-17 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 82 / 4e-17 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 69 / 3e-12 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G410500.1 pacid=42787781 polypeptide=Potri.001G410500.1.p locus=Potri.001G410500 ID=Potri.001G410500.1.v4.1 annot-version=v4.1 ATGGATCTTCTCTGCCACGCATACTCTAATTCCTCAGATGAAGAACCCGAACCCGAACCCGAATCCGAATCCAAACCCGAATACGGACCCGAATTCAGAC CCTTCATCCCCCCTCCTCCTAAACGTTTCAAACCGGAAACCCCATCTCAAAATTTCCGAACAGAAGCTCCGGTTCCTGGCAGATACATATCCAAGCGTGA ACGAGCTCTCTCTGCCCAATCCCCTCGGGTCCCCAACCCGGCAACAAACCCCAACCTGAACCCGAACCCCCCTGTCGTGGCTTCTCCTGTTCTGGGAAGT ATTAGTGATTCGGAGATACCCCGTGATGTTTTATCATCATTGAGACAAGCAAAGGGCCGTGCATCGCTAAGTCAAATACCCAAAAGGCTGGCGGTTGATT TGCGTAGCCATACGAAGGCTGTCAATGCTTTAGATTGGTCTCCAAGTCATGCTCATCTCCTTGCTTCTGCCGGAATGGATCAAACTGTCTGTGTATGGAA CGTGTGGAGCCGAGATCAGAAAATAGCACGCCTATTTAGATATCATAATGCAGCAGTTAAAGATGTGAAATGGTCGCCACAGGGACTATCCGTGCTTTCT TGTGGATATGACTGCTCATCCAGGTTGATTGATGTTGAAAAGGGGATAGAGACTCAGATTTTCAAGGAAGATCAGGTTGTTGGAGTAATAAAGTTCTGTC CAGATAACTCCAACATCTTCCTTTCTGGCGGATCAAAGGGCTGTCTCAGATTGTGGGATATTAGAAATGGTAATGTGGTTCGTGAATACATTCGAGGTCT AGGTCCAATACTTGATGTTGAATTTACCATCAATGGCAAGCAGTTTATCTCATCCAGTGATGTCTCTGGAAGCAATCTCAGTGAAAATTCAATTATTGTT TGGGATGTCTCACGGCAGGTTCCATTGTCCAACCAGGTTTATGTGGAAGCCTATACATGTCCAAGTGTTAGGTGCCATCCATTCGAGCCATGTTTCGTTG CCCAGTCCAATGCAAATTATATTGCTATCTTCTCTTCAAGTCCACCTTTCAGGCTGGACAAGTATAAAAGGTATGAAAGCCATGGTGTCTCTGGGTTCCC CGTTAAATGCAATTTTAGCCTGGATGGTGAGAAGCTTGTCTCCGGCTCGTCAGATGGTTGTATATACATATACAACTACAGGTCATCAGAGCTTATCAGA AAAATCAAGGTGTATGAGCAAGCATGCATAGACGTTGTTTTCCACCCAGTTTTGCCAAATGTAATTGGTTCATGCAGTTGGAATGGGGATGTTTCAATAT TTGAGTGA
AA sequence Show only first row Show all	>Potri.001G410500.1 pacid=42787781 polypeptide=Potri.001G410500.1.p locus=Potri.001G410500 ID=Potri.001G410500.1.v4.1 annot-version=v4.1 MDLLCHAYSNSSDEEPEPEPESESKPEYGPEFRPFIPPPPKRFKPETPSQNFRTEAPVPGRYISKRERALSAQSPRVPNPATNPNLNPNPPVVASPVLGS ISDSEIPRDVLSSLRQAKGRASLSQIPKRLAVDLRSHTKAVNALDWSPSHAHLLASAGMDQTVCVWNVWSRDQKIARLFRYHNAAVKDVKWSPQGLSVLS CGYDCSSRLIDVEKGIETQIFKEDQVVGVIKFCPDNSNIFLSGGSKGCLRLWDIRNGNVVREYIRGLGPILDVEFTINGKQFISSSDVSGSNLSENSIIV WDVSRQVPLSNQVYVEAYTCPSVRCHPFEPCFVAQSNANYIAIFSSSPPFRLDKYKRYESHGVSGFPVKCNFSLDGEKLVSGSSDGCIYIYNYRSSELIR KIKVYEQACIDVVFHPVLPNVIGSCSWNGDVSIFE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54520			Transducin/WD40 repeat-like su...		Potri.001G410500 [exp]	0	1
AT5G45030			Trypsin family protein (.1.2)		Potri.015G121400 [exp]	1.73	0.8127
AT5G38470		RAD23D	RADIATION SENSITIVE23D, Rad23 ...		Potri.008G119700 [exp]	4.24	0.7607
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.010G154000 [exp]	10.39	0.7994	Pt-SPL1.4
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Potri.003G096700 [exp]	11.48	0.7332	Pt-CEO1.1
AT5G04250			Cysteine proteinases superfami...		Potri.008G036700 [exp]	12.12	0.7340
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125200 [exp]	12.44	0.7252
AT2G29200		APUM1	pumilio 1 (.1)		Potri.008G058300 [exp]	13.85	0.7833
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Potri.013G161700 [exp]	14.59	0.7926	Pt-DET1.1
AT5G19150			pfkB-like carbohydrate kinase ...		Potri.008G203600 [exp]	15.42	0.7372
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Potri.016G144200 [exp]	18.38	0.7461

Compare expression of checked genes

Potri.001G410500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.