Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20640 274 / 2e-87 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 187 / 6e-55 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G21340 132 / 4e-35 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 133 / 9e-35 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G05170 124 / 1e-32 bHLH bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27660 127 / 5e-32 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19500 117 / 5e-30 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29100 116 / 2e-28 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G31050 115 / 4e-28 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 104 / 1e-26 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G129500 [exp] 732 / 0 AT3G20640 289 / 3e-93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G033000 [exp] 358 / 6e-120 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.004G029100 [exp] 357 / 3e-119 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G083700 [exp] 139 / 4e-37 AT4G29100 279 / 3e-91 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G051600 [exp] 132 / 6e-35 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G185900 [exp] 127 / 4e-33 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G230800 [exp] 127 / 2e-32 AT1G27660 247 / 3e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G032400 [exp] 120 / 1e-29 AT1G27660 234 / 3e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G119601 [exp] 119 / 1e-29 AT1G27660 145 / 2e-39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038550 [exp] 334 / 6e-110 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014807 [exp] 275 / 2e-87 AT3G20640 179 / 5e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007613 [exp] 237 / 9e-75 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018400 [exp] 230 / 4e-72 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10023669 [exp] 121 / 2e-30 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10013874 [exp] 115 / 9e-29 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10025599 [exp] 109 / 2e-28 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10010638 [exp] 114 / 1e-27 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027064 [exp] 107 / 2e-27 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10041649 [exp] 102 / 2e-24 AT2G31730 117 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G410600.2 pacid=42793741 polypeptide=Potri.001G410600.2.p locus=Potri.001G410600 ID=Potri.001G410600.2.v4.1 annot-version=v4.1 ATGGCAGATGAGTACACAAGCACAAACTGGTGGGATTCATCTTCAAGCAGGAACAGGTTTGATAGTACTGGATCATCTTCTACAACTTCAGGACTTAATA GTTTACGTAGCTTTGCTTGGCCGACAGAAATGGCTGATGTCAAAGGAAGGTCTTCAATGGAAACTGTTTCGGTCTCAGATAGTTCTGTTGCTTTCCATGA TTCCCAGAAGCTGCAACAAGGCCATGATTCTTCAGCTGACTTGCATATGATGGGTTTGGGCCTCTCTTCACAAGCCATGGATTGGAATCAAGCCTTACTT CGCGGCGACAAGTCTGAGAACAGTTTTCGATCGATGCTACAAGATAATTTGAGTTCAAGCACCAATTATCAGCAAGAAACTGCAGGAATTGGATCTTCTC AATCTCAGTGGAGGGAGAGAGTGTTCACAGGGGTCACTGGAGATTCCTCTATGAGTGAGTTTAAGCAAATGAATCGAGGCTTTTCTTTAGATCAACCACA GTTTAGCCCTCATGGGAGCTCCAGTGATAGTACCGTGTCATGTCAAGGCTTGCAGTCTAGTTTCCCAATGGATTCATCAAGTATCTATGGAAGCCCTTCA ACTATGGTACAAGGGCTATTGATATCAGATAATCAAGCACGGCAGTCTTCTTTTGAGAACAGACCGATGAGTTATGCATACGGGGCAAATTATAGTCTTG GCACTAATGAATTGCTGCCTTCTTGGCCAAAAGGACCTCAATTCTTGAGAAATTCACCTCCCAAACAGACTTCTAGTAACCAATTGCACTTCTCCAATAA TACTCCATTTTGGAATGCATCTGCAAGTGCCATGAATGATGTTCGTCCGAGCTATTTCCCGTCGATGCAACCGCAGTTTGCTACATCGAATTTCGATGAA AAACCAAAGCAGAATATATCTGAAGTACGGGATTCGAATATAGCAGTAAAGAAAAGTGGGAGTGAAGCAGCAACAAAAAGGCCTAGAAATGAAATACCAT CATCTTTGCCATCTTTTAAGGTAAGGAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCGCCTTTCGGAAAGACTGATACAGCCTC GGTGCTCTCTGAAGCTATTGAATACATCAAATTCCTCCATCAGCAAGTTACAGTCTTCAGCACCCAATACATGAAAAGTGGAACTCCCATACTCCACCAA CAGAGTTCTGACAAGTCCAAGGACCTCGAAGGACAAAAACAAGATCTTAGAAGCCGAGGGCTATGTCTGGTACCGGTATCGAGCACTTTTCCGGTTACTC ATGAGACCGCAGTTGATTTTTGGACCCCTACATTTGGAGGGACTTACAGATAA
AA sequence Show only first row Show all	>Potri.001G410600.2 pacid=42793741 polypeptide=Potri.001G410600.2.p locus=Potri.001G410600 ID=Potri.001G410600.2.v4.1 annot-version=v4.1 MADEYTSTNWWDSSSSRNRFDSTGSSSTTSGLNSLRSFAWPTEMADVKGRSSMETVSVSDSSVAFHDSQKLQQGHDSSADLHMMGLGLSSQAMDWNQALL RGDKSENSFRSMLQDNLSSSTNYQQETAGIGSSQSQWRERVFTGVTGDSSMSEFKQMNRGFSLDQPQFSPHGSSSDSTVSCQGLQSSFPMDSSSIYGSPS TMVQGLLISDNQARQSSFENRPMSYAYGANYSLGTNELLPSWPKGPQFLRNSPPKQTSSNQLHFSNNTPFWNASASAMNDVRPSYFPSMQPQFATSNFDE KPKQNISEVRDSNIAVKKSGSEAATKRPRNEIPSSLPSFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHQQVTVFSTQYMKSGTPILHQ QSSDKSKDLEGQKQDLRSRGLCLVPVSSTFPVTHETAVDFWTPTFGGTYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Potri.001G410600 [exp]	0	1
AT1G15190			Fasciclin-like arabinogalactan...		Potri.001G306800 [exp]	4.58	0.8877
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Potri.010G135200 [exp]	6.24	0.8377
AT1G49000			unknown protein		Potri.012G059500 [exp]	6.48	0.8371
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Potri.011G129500 [exp]	8.00	0.8556
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Potri.010G082700 [exp]	8.24	0.8332
AT4G02810		FAF1	FANTASTIC FOUR 1, Protein of u...		Potri.002G053400 [exp]	8.48	0.8741
AT3G11760			unknown protein		Potri.010G244100 [exp]	8.48	0.8324
AT1G07175			unknown protein		Potri.001G277600 [exp]	9.05	0.7880
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Potri.006G066150 [exp]	11.61	0.8549
					Potri.019G031732 [exp]	11.83	0.8282

Compare expression of checked genes

Potri.001G410600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.