Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 758 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 740 / 0 ARK3 receptor kinase 3 (.1) AT1G65800 692 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 683 / 0 ARK1 receptor kinase 1 (.1) AT4G27300 671 / 0 S-locus lectin protein kinase family protein (.1) AT1G11340 659 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 639 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 639 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11300 629 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11350 622 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G418100 [exp] 1454 / 0 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411300 [exp] 1451 / 0 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 1402 / 0 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 1087 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 1083 / 0 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 873 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 866 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G129300 [exp] 857 / 0 AT4G21380 599 / 0.0 receptor kinase 3 (.1) Potri.001G412300 [exp] 834 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037729 [exp] 926 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 919 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 914 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016860 [exp] 902 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10016862 [exp] 858 / 0 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016859 [exp] 788 / 0 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 785 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 780 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 779 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 763 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.001G410800.2 pacid=42787621 polypeptide=Potri.001G410800.2.p locus=Potri.001G410800 ID=Potri.001G410800.2.v4.1 annot-version=v4.1 ATGGACACTCTTTCTTCAATGCTAATTATTATTGCGAATCTACTCCTTCTATTCTCTAGATTTTGTAATACAGCTAATACCCTTACTTTGTCTCAATCTA TTCGTGATGGAGGGACAAGAACCTTAGTTTCGAAAGATGGAAGTTTTGAGCTTGGTTTCTTCAGTCCTGGAAGTTCCAGGAACCGTTATGTCGGAATATG GTACAAGAACATCTCAGTTAGAACTGTTGTTTGGGTTGCAAACAGAAACAACCCAATCAATGATTCCTCTGGCTTCTTGATGTTAGACAACACAGGAAAT CTTGTACTTGTCAGCAACAACAATAGTACTGTTGTTTGGTCATCAAACTCAAAGAAAGCAGCTCAGAGTGCAATGGGAGAACTCCTGGATTCTGGGAATC TGGTCTTAAGAGATGAGAAAGATGTCAATTCTGGAAGCTATTTGTGGCAGAGTTTTGATTATCCATCTGATACAATGCTTCCAGGAATGAAGCTTGGATG GGACTTACGGATTGGACTTGATCGGCGGCTATCAGCATGGAAGAGCCCTGATGATCCATCTTCTGGAGATTTTACATGGGGAACACAACTACAGAGTAAT CCTGAGTTAGTTATTTGGAAGGGGTCCGAGAAGTACTTTAGAAGTGGTCCATGGAATGGTATCGGGTTCAGTGGTGAGGCGGCGTTAAGGATTAATCCAG TTTTTTATTTTGATTTTGTCGACAACGGGGAGGAGGTTTATTACACATACAACCTCAAAAATAAATCTTTAATCACGAGGTTAGTTATGAACCAAACTAC CGGTTTTTTACGGCAGCGTTACACCTGGAATGAAATCAGTCAGACATGGGAACTCTATGCATATGTGCCGAGAGATTACTGTGACAATTACAATCTTTGT GGTGCCTATGGAAATTGCATCATTAGCCAGTCGCCAGTTTGTGAATGTTTAGAAAAATTCACGCCTAAATCACCTGAGAGTTGGAATTCAATGAACTGGT CTCAAGGGTGTGTACGAAATAAGCCACTAGATTGCCAGAAGGGAGATGGATTCGTTAAATATGTTGGTTTGAAATTGCCAGATGCTACAAATTCTTGGGT AAACAAAACTATGAATCTCAAGGAATGCAGGTCAAAATGCTTACAAAACTGTTCTTGTATGGCATATACAGCTACAGATATTAAGGAACGCAGTGGCTGT GCTATTTGGTTTGGCGATCTGATAGATATTAGACAGTTTCCAGATGGCGGGCAGGAAATATACATTCGCATGAATGCTTCAGAATCAAAGGCTAAAGCTG CATCTAAGATAAAAATGGAAATGGGAATTGCACTATCTATTTTCGTGGCCTGCGGGATGCTTTTGGTCGCCTATTACATCTTCAAAAGAACGGAAAAACT CAAAGGAGGCAACAGAGAAGAAAATGATCAGATAGATAGTGGACCAATGGAAGACATGGAGCTACCCCTATTCCAGTTCACTACAATAGCCAAAGCCACC AACGGCTTTTCATTAAACAACAAAATAGGAGAAGGTGGTTTTGGACCTGTGTACAAGGGTACTCTAGAAGATGGCCAAGAAATAGCAGTAAAAACGCTAT CAAGGAGTTCTGGACAAGGATTAAATGAGTTCAAAAATGAAGTTATACTGATCACAAAGCTTCAGCACCGAAATCTTGTAAAACTTCTTGGCTGTTGCAT TCAAGGAGAAGAGAAAATTCTGGTTTATGAATACATGCCCAACAGAAGCCTCGATTCCTTCATTTTCGATCAAACAAGAGGCAAACTATTAGACTGGTCC AAGCGTTTCAGCATTATATGTGGTATTGCCAGGGGGCTTCTATATCTTCATCAGGATTCCAGATTGAGGATTGTTCACAGGGATCTTAAAGCAAGCAACG TTTTACTTGATAAGGATATGAACCCAAAAATCTCTGATTTTGGTTTGGCCAGAATGGTTGGTGGAGACCAGACGGAAGGAAACACAACCAGAGTTATTGG GACTTATGGTTATATGGCTCCTGAATATGCTACTGATGGGCTCTTCTCAGTGAAGTCTGATGTTTTTAGCTTTGGAATCTTAATGCTTGAGATAATAAGT GGAAAGAAGAGTAGAGGATTTTATCATCCAGACCGTAGCCTAAGCCTTACTGCACATGCATGGAGATTGTGGAAAGATGGAAAACCTTTGGACTTAATTG AGGCGTTTCCAGGAGAGTCACGCAATTTATCAGAAGTGATCATGAGATGCATAAACATTAGTCTCTTGTGTGTGCAGCATCATCCTGATGATAGGCCAAG CATGGCCACTGTGGTTTGGATGCTAGGAGGTGAGAATACACTGCCTCAGCCAAATGAACCAGGCTTTTTTAAGGGTAGCGGTCCGTTCGGACCATCTTCT TCATCAAGCAATATTGAATTATATTCGAACAATGAATTTACTGCCTCACTCTTGTATCCTCGGTAG
AA sequence Show only first row Show all	>Potri.001G410800.2 pacid=42787621 polypeptide=Potri.001G410800.2.p locus=Potri.001G410800 ID=Potri.001G410800.2.v4.1 annot-version=v4.1 MDTLSSMLIIIANLLLLFSRFCNTANTLTLSQSIRDGGTRTLVSKDGSFELGFFSPGSSRNRYVGIWYKNISVRTVVWVANRNNPINDSSGFLMLDNTGN LVLVSNNNSTVVWSSNSKKAAQSAMGELLDSGNLVLRDEKDVNSGSYLWQSFDYPSDTMLPGMKLGWDLRIGLDRRLSAWKSPDDPSSGDFTWGTQLQSN PELVIWKGSEKYFRSGPWNGIGFSGEAALRINPVFYFDFVDNGEEVYYTYNLKNKSLITRLVMNQTTGFLRQRYTWNEISQTWELYAYVPRDYCDNYNLC GAYGNCIISQSPVCECLEKFTPKSPESWNSMNWSQGCVRNKPLDCQKGDGFVKYVGLKLPDATNSWVNKTMNLKECRSKCLQNCSCMAYTATDIKERSGC AIWFGDLIDIRQFPDGGQEIYIRMNASESKAKAASKIKMEMGIALSIFVACGMLLVAYYIFKRTEKLKGGNREENDQIDSGPMEDMELPLFQFTTIAKAT NGFSLNNKIGEGGFGPVYKGTLEDGQEIAVKTLSRSSGQGLNEFKNEVILITKLQHRNLVKLLGCCIQGEEKILVYEYMPNRSLDSFIFDQTRGKLLDWS KRFSIICGIARGLLYLHQDSRLRIVHRDLKASNVLLDKDMNPKISDFGLARMVGGDQTEGNTTRVIGTYGYMAPEYATDGLFSVKSDVFSFGILMLEIIS GKKSRGFYHPDRSLSLTAHAWRLWKDGKPLDLIEAFPGESRNLSEVIMRCINISLLCVQHHPDDRPSMATVVWMLGGENTLPQPNEPGFFKGSGPFGPSS SSSNIELYSNNEFTASLLYPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.001G410800 [exp]	0	1
AT5G63520			unknown protein		Potri.011G010100 [exp]	3.31	0.9058
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Potri.011G025200 [exp]	12.84	0.9012
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Potri.016G123401 [exp]	13.41	0.8838
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014301 [exp]	16.67	0.9025
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052500 [exp]	17.20	0.9011
AT1G69360			Plant protein of unknown funct...		Potri.018G020800 [exp]	17.97	0.8795
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.011G148200 [exp]	19.18	0.8831
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Potri.014G141500 [exp]	21.72	0.8930	Pt-ACD32.1
					Potri.006G102900 [exp]	23.32	0.8669
AT5G65660			hydroxyproline-rich glycoprote...		Potri.019G055500 [exp]	23.36	0.8939

Compare expression of checked genes

Potri.001G410800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.