Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 775 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 754 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 727 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 711 / 0 ARK2 receptor kinase 2 (.1) AT4G27300 710 / 0 S-locus lectin protein kinase family protein (.1) AT1G11340 694 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 673 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 655 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11350 641 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11330 640 / 0 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G411100 [exp] 1582 / 0 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G418100 [exp] 1130 / 0 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 1127 / 0 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411300 [exp] 1125 / 0 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G410800 [exp] 1110 / 0 AT4G27290 758 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 897 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G129300 [exp] 897 / 0 AT4G21380 599 / 0.0 receptor kinase 3 (.1) Potri.001G413800 [exp] 882 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 860 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037729 [exp] 986 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 963 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016871 [exp] 954 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 929 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10016862 [exp] 910 / 0 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 829 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 827 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016859 [exp] 816 / 0 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 804 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 794 / 0 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.001G411000.1 pacid=42793118 polypeptide=Potri.001G411000.1.p locus=Potri.001G411000 ID=Potri.001G411000.1.v4.1 annot-version=v4.1 ATGGATATCCTTCCACATACAGTTTTCTGTACTATCCTTTCACTTACACTTTTCAATATTTCCTTCCTTATTTTCCAATTAAAATTCTCCACTGCTCTTG ACACCATTGCTCCATCACAATCTCTAATTGATGGTAAAACCTTGGTTTCTAGAGAAGGAAGCTTTGAACTGGGTTTCTTTAGCCCTGGAATTTCTAAGAA TCGTTACTTGGGAATTTGGTACAAAAATATCCCAGTTAGAACAGTTCTTTGGGTTGCAAACCGGCGGAATCCAATTGAAGATTCCTCTGGCTTTTTGACC ATAGACAATACTGCCAATCTTTTGCTTGTTAGCAACCGCAACGTTGTTGTTTGGTCATCAAACTCAACAATAGTAGCCAAGAGTCCAATAGTACTGCAGC TCCTGGATTCTGGTAATCTTGTCTTAAGAGATGAAAAAAGTGACTCTGGAAGATACCTGTGGCAAAGTTTTGATCATCCATCTGATACACTGATTCCAGG AATGAAGCTTGGCTGGGATTTAAGGACCGGACTTGAAAGGCGCCTATCATCCTGGAGGAGCTCAGATGATCCATCTCCCGGAGACTTAACTTGGGGGATT AAACTACAAAATAACCCTGAGACAATTATCTGGAGAGGATCACAACAGTACTTCAGGAGTGGCCCTTGGACAGGCATTGCATTCACAGGTGCTCCAGAAC TAGTCCAAAACCCAGTTTTTAAGTTAAATTTTGTCTCAAGTGAGGATGAAGTATATTTATCCTACAACCTCAAAAATATATCAGCATTCTCCAGGATAGT TGTAAATCAGACTACCAATTATCGTGAAGCCTACACATGGAATGAAGCAACCCAAACTTGGGTCCTCTATGCTTCTGTGCCAAGAGACTCGTGCGATAAT TATGCCCTTTGTGGTGCCAATGGAAATTGCATCATTAATGACTTGCCAATTTGTCGATGTTTAAAAAAATTCAAGCCTAAATCACCAGAGAAATGGAACT TAATGGATTGGTCTGGTGGGTGCGTGCGCAATAAACCATTGAACTGCCAGAAGGGAGATGGATTCGTGAAATATCTGGGGCTGAAATGGCCTGATGCTAC TCATTCTTGGCTAAACAACAGTATGAATCTCAATGAATGCAGAGCTAAATGTTTACAGAACTGTTCCTGTATGGCATACAGTAATTCAGATGTTAGAGGA GGCGGCAGTGGCTGCATAATTTGGTATGGTGACCTGATAGATATTAGACAGTTTCCAGCTGGAGGTCAGGAACTATACATTCGCATGAATCCTTCAGAAT CAGATGCAAAAGCTGAGCCTACCGTAAAGATTGCGGTGATAGTTTCAACAGTCATTGCCATGGTCTCCGGGCTGCTTGTGTTCTGTTATTGCATTTGCAA ACGAAAGGAAAAGTGCAGAGAAATGGACCAGCAAAATGATCAGATCACTGATGGAGAGAATGAAGACTTGGAGCTACCACAATTTGAGTTCGCTAAAATA GTCAATGCAACCAACAACTTTTCAATAAAAAACAAATTAGGCCACGGAGGTTTTGGACCTGTCTACAAGGGTACACTAGAAGATGGACAAGAAATTGCTG TGAAGAGGTTATCAATGAGCTCCAGACAAGGTTCAAAAGAGTTCAAAAATGAAGTTATACTGATTAACAAGCTACAGCACCGAAATCTTGTAAAGCTTCT TGGATGTAGCATTCAAAGAGAGGAAAGACTTCTGGTGTATGAATATATGCCTAACAAAAGCCTGGACTCTTTCCTTTTTGATCAGACAAAAAGTAAACTG TTAGACTGGTCTAAGCGGTTCAACATTATCTGCGGGATCGCCAGGGGGCTTCTGTATCTTCATCAAGATTCTAGATTGAGGATTATACATAGAGATCTGA AATCAAGTAACGTTTTACTTGACAAGGACATGAACCCAAAAATTTCTGATTTCGGTTTGGCTAGAACTTTCGGAGGAGATCAGACTGAAGGAAACACAAG TAGAGTAGTTGGCACCTATGGTTATATGGCACCAGAATATGCTACTGATGGACTCTTCTCAGTGAAATCTGATGTCTTTAGCTTTGGTATCATGTTGCTA GAGATAGTAACCGGAAAGAAAAGTAGAGGGTTTTACCATCCAGATAATACCCTAAGCCTCATAGGATATGCATGGAGATTGTGGAAAGAAGGCAAACCAT TAGAATTGGTTGATGGATTGGCCGAAGAGTCGTGGAATCTATCAGAAGTCATGAAATGTATCCACATTAGCCTGTTATGTGTTCAACAATACCCTGAGGA TAGACCAAGCATGGCCTCAGTGGTTTTGATGTTAGGTGGAGAGAGGACATTGCCAAAGCCAAAAGAACCAGGCTTCTTTAAGGATAGAGGTCCTGCTGAA GCATATTCTTCATCCAGCAAGGTGGAATCATCTTCAACCAATGAAATTTCAACCTCAGTCTTGGAACCTCGGTAG
AA sequence Show only first row Show all	>Potri.001G411000.1 pacid=42793118 polypeptide=Potri.001G411000.1.p locus=Potri.001G411000 ID=Potri.001G411000.1.v4.1 annot-version=v4.1 MDILPHTVFCTILSLTLFNISFLIFQLKFSTALDTIAPSQSLIDGKTLVSREGSFELGFFSPGISKNRYLGIWYKNIPVRTVLWVANRRNPIEDSSGFLT IDNTANLLLVSNRNVVVWSSNSTIVAKSPIVLQLLDSGNLVLRDEKSDSGRYLWQSFDHPSDTLIPGMKLGWDLRTGLERRLSSWRSSDDPSPGDLTWGI KLQNNPETIIWRGSQQYFRSGPWTGIAFTGAPELVQNPVFKLNFVSSEDEVYLSYNLKNISAFSRIVVNQTTNYREAYTWNEATQTWVLYASVPRDSCDN YALCGANGNCIINDLPICRCLKKFKPKSPEKWNLMDWSGGCVRNKPLNCQKGDGFVKYLGLKWPDATHSWLNNSMNLNECRAKCLQNCSCMAYSNSDVRG GGSGCIIWYGDLIDIRQFPAGGQELYIRMNPSESDAKAEPTVKIAVIVSTVIAMVSGLLVFCYCICKRKEKCREMDQQNDQITDGENEDLELPQFEFAKI VNATNNFSIKNKLGHGGFGPVYKGTLEDGQEIAVKRLSMSSRQGSKEFKNEVILINKLQHRNLVKLLGCSIQREERLLVYEYMPNKSLDSFLFDQTKSKL LDWSKRFNIICGIARGLLYLHQDSRLRIIHRDLKSSNVLLDKDMNPKISDFGLARTFGGDQTEGNTSRVVGTYGYMAPEYATDGLFSVKSDVFSFGIMLL EIVTGKKSRGFYHPDNTLSLIGYAWRLWKEGKPLELVDGLAEESWNLSEVMKCIHISLLCVQQYPEDRPSMASVVLMLGGERTLPKPKEPGFFKDRGPAE AYSSSSKVESSSTNEISTSVLEPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411000 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G123700 [exp]	5.83	0.9230
AT4G08850			Leucine-rich repeat receptor-l...		Potri.006G261900 [exp]	6.92	0.9084
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.014G106600 [exp]	10.29	0.9092	COMT4,Pt-RCOMT1.6
AT1G71865			unknown protein		Potri.019G086700 [exp]	11.48	0.8269
AT2G24600			Ankyrin repeat family protein ...		Potri.014G050532 [exp]	15.81	0.9064
AT4G13440			Calcium-binding EF-hand family...		Potri.019G027000 [exp]	18.49	0.8921
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G124400 [exp]	19.44	0.8385
AT4G13440			Calcium-binding EF-hand family...		Potri.019G027100 [exp]	19.97	0.8903
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.003G041600 [exp]	20.00	0.8879
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G123800 [exp]	20.24	0.8107

Compare expression of checked genes

Potri.001G411000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.