Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 769 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 747 / 0 ARK3 receptor kinase 3 (.1) AT4G27300 696 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 696 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 691 / 0 ARK1 receptor kinase 1 (.1) AT1G11340 669 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 667 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 647 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 644 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11350 640 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G411300 [exp] 1451 / 0 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G418100 [exp] 1447 / 0 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G410800 [exp] 1409 / 0 AT4G27290 758 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 1116 / 0 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 1116 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 883 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 879 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 854 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G129300 [exp] 848 / 0 AT4G21380 599 / 0.0 receptor kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016871 [exp] 939 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 939 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 931 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016860 [exp] 922 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10016862 [exp] 881 / 0 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016859 [exp] 803 / 0 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 793 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 793 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 790 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 774 / 0 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.001G411400.1 pacid=42791638 polypeptide=Potri.001G411400.1.p locus=Potri.001G411400 ID=Potri.001G411400.1.v4.1 annot-version=v4.1 ATGGACACTCTTTCTTCAATGCTTATTACTGCGAATATCCTCCTCCTATTCTCTAGATTCTGTAATACAGCTGATACCCTTGCCTTTTCTCAATCTATTA GTGATGGAGGGACAGGAACCTTAGTCTCGAAGGATGGAAGTTTTGAGCTTGGTTTCTTCAGTCCTGGAAGTTCCAGGAACCGTTATATGGGAATATGGTA CAAGAACATCCCAGTTCGAACTGTTGTTTGGGTTGCAAACAGAAACAACCCAATCAATGATTCCTCTGGTTTCTTGTTGATAGACAACACAGGAAATTTT GTACTTGTCAGCAACAACAATAGTACTGTTGTTTGGTCATCAAGCTTAACGAAAGCAGGCCGGAGAGCAATGGGAGAACTCCTGGATTCTGGGAATCTGG TCTTAAGAGATGAGAAAGATACCAATTCTGGAAGCTACTTGTGGCAGAGTTTTGACTACCCATCTGATACTATGATTCCAGGAATGAAGCTTGGATGGGG CTTAAGGACTGGACTTGATCGACGGCTATCAGCATGGAAGGGCCCTGATGATCCATCTCCAGGAGATTTTACTTGGGGAACACAACTACAGGGTAATCCC GAGTTAGTTATGTGGAAGGGGTCCAAGAAGTACTGTAGAAGTGGTCCATGGAATGGTATCGGGTTCAGTGGTGCGCCGGAGTTGAGGAAAAATCCAGTGT TTAATTTTGATTTTGTCGACGACGGGGAGGAAGTATATTACACATACAACCTCAAAAATAAATATGTATTTACGAGGGTAGTTATGAACCAAACTACCTA TATTCGGCAGCGTTACACCTGGAATGAAATCAATCAGACATGGGTACTCTATGCAACTGTGCCTAAAGATTACTGTGACACCTACAATCTTTGTGGTGCC TACGGAAATTGCATCACCAGCCAGTCGCCAGTTTGTGAATGTTTAGAAAAATTCACGCCTAAATCACCTGAGAGTTGGAATTCAATGGACTGGTCTCAAG GTTGTGTACGAAATAAGCCACTGGATTGCCAGAAGGAAGATGGATTCGTTATATATGTTGGTTTGAAATTGCCAGATGCTACAAATTCTTGGGTTAACAA AACTATGAATCTCAAGGAATGCAGGTCAGAATGCTTACAAAATTGTTCTTGTATGGCATATACAGCTGCAGATATTAAGGAAGGTAGTGGCTGTGCTATT TGGTTTGGCGATCTGATAGATATTAGACAGTTTTCAGCTGCAGGGCAGGAAATATACATTCGCTTGAATGCTTCAGAATCGAGGGCTAAAGCTGCATCTA AGATAAAGATGGCAGTGGGAATTGCACTATCTATTTTCGTGGCCTGCGGGATACTTTTGGTCGCCTATTACATCTTCAAAAGAAAGGCAAAACTCATAGG AGGCAACAGAGAAGAAAATGATCAGATAGATAGTGGACCAAAGGAAGACTTGGAGCTACCCCTATTCCAGTTCACTACAATAGCCAAAGCCACCAACGGC TTTTCATTCAACAACAAGCTAGGAGAAGGTGGTTTTGGACCTGTGTACAAGGGTACTCTAGAAGATGGTCAAGAAATAGCAGCAAAGACGCATTCAAGGA GTTCTGGACAAGGAATAAATGAGTTCAAAAATGAAGTTATACTGATCACAAAGCTTCAGCACCGAAATCTTGTAAAACTTCTTGGCTGTTGCATTCAAGG AGAAGAGAAAATTCTGGTTTATGAATACATGCCCAACAAAAGCCTCGATTCCTTCATTTTCGATCAAACAAGAGGCGAACTGTTAGACTGGTCCAAGCGT TTCAGCATTATATGTGGTATTGCTAGAGGGCTTCTATATCTTCATCAGGATTCCAGATTGAGGATTGTACACAGGGATCTTAAAGCAAGTAACGTTTTAC TTGATAAGGATATGAACCCAAAAATCTCTGATTTTGGTTTGGCCAGAATGTTTGGTGGAGACCAGACGGAAGGAAACACAACCAGAGTTGTTGGAACTTA TGGTTATATGGCTCCTGAATATGCTACTGATGGGCTCTTCTCAGTGAAGTCTGATGTTTTTAGCTTTGGAATCTTAATGCTTGAGATAATAAGCGGAAAG AAGAGTAGAGGATTTTATCATCCGGACCATAGCCTAAGCCTTATTGGACATGCATGGAGACTGTGGAAAGATGGAAAACCTTTGGACTTAATTGAGGCGT TTCCAGGAGAGTCATGCAATTTATCAGAAGTGATCATGAGATGCATAAACATTAGTCTCTTGTGTGTGCAGCAGCATCCTGATGATAGGCCAAGCATGGC CACTGTGGTTTGGATGCTAGGAGGTGAGAATACACTGCCTCAGCCAAAGGAACCAGGCTTTTTTAAGGGTAGCGGTCCGTTCGGACCATCTTCTTCATCA AGCAATATTGAATTATCTTCGAACAATGAAATTACCACCTCACTCTTTTATCCTCGGTAG
AA sequence Show only first row Show all	>Potri.001G411400.1 pacid=42791638 polypeptide=Potri.001G411400.1.p locus=Potri.001G411400 ID=Potri.001G411400.1.v4.1 annot-version=v4.1 MDTLSSMLITANILLLFSRFCNTADTLAFSQSISDGGTGTLVSKDGSFELGFFSPGSSRNRYMGIWYKNIPVRTVVWVANRNNPINDSSGFLLIDNTGNF VLVSNNNSTVVWSSSLTKAGRRAMGELLDSGNLVLRDEKDTNSGSYLWQSFDYPSDTMIPGMKLGWGLRTGLDRRLSAWKGPDDPSPGDFTWGTQLQGNP ELVMWKGSKKYCRSGPWNGIGFSGAPELRKNPVFNFDFVDDGEEVYYTYNLKNKYVFTRVVMNQTTYIRQRYTWNEINQTWVLYATVPKDYCDTYNLCGA YGNCITSQSPVCECLEKFTPKSPESWNSMDWSQGCVRNKPLDCQKEDGFVIYVGLKLPDATNSWVNKTMNLKECRSECLQNCSCMAYTAADIKEGSGCAI WFGDLIDIRQFSAAGQEIYIRLNASESRAKAASKIKMAVGIALSIFVACGILLVAYYIFKRKAKLIGGNREENDQIDSGPKEDLELPLFQFTTIAKATNG FSFNNKLGEGGFGPVYKGTLEDGQEIAAKTHSRSSGQGINEFKNEVILITKLQHRNLVKLLGCCIQGEEKILVYEYMPNKSLDSFIFDQTRGELLDWSKR FSIICGIARGLLYLHQDSRLRIVHRDLKASNVLLDKDMNPKISDFGLARMFGGDQTEGNTTRVVGTYGYMAPEYATDGLFSVKSDVFSFGILMLEIISGK KSRGFYHPDHSLSLIGHAWRLWKDGKPLDLIEAFPGESCNLSEVIMRCINISLLCVQQHPDDRPSMATVVWMLGGENTLPQPKEPGFFKGSGPFGPSSSS SNIELSSNNEITTSLFYPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411400 [exp]	0	1
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.001G219500 [exp]	5.00	0.7536
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Potri.002G106800 [exp]	5.83	0.7892
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.008G186800 [exp]	11.13	0.7860
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.004G197400 [exp]	14.49	0.7644	Pt-EIN3.1
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Potri.002G073400 [exp]	15.19	0.7423	Pt-SCL1.2
AT3G26020			Protein phosphatase 2A regulat...		Potri.008G179900 [exp]	25.29	0.7553
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G258100 [exp]	27.71	0.7510
AT3G15760			unknown protein		Potri.018G131100 [exp]	35.19	0.6605
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Potri.015G109800 [exp]	37.62	0.7092	RHD2.2
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Potri.007G008200 [exp]	39.16	0.6924

Compare expression of checked genes

Potri.001G411400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.