Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 800 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 706 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 697 / 0 ARK3 receptor kinase 3 (.1) AT1G65800 678 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 672 / 0 ARK1 receptor kinase 1 (.1) AT1G11340 640 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 630 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 613 / 0 S-locus lectin protein kinase family protein (.1.2) AT4G21390 605 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 598 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125401 [exp] 1129 / 0 AT4G27290 824 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125301 [exp] 1082 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 1065 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125351 [exp] 1047 / 0 AT4G27290 748 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125151 [exp] 1045 / 0 AT4G27290 757 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125501 [exp] 995 / 0 AT4G27290 709 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 921 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125100 [exp] 904 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 894 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038554 [exp] 845 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 840 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 827 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 823 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 823 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 822 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 762 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10037729 [exp] 756 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 753 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 749 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.001G411700.1 pacid=42790591 polypeptide=Potri.001G411700.1.p locus=Potri.001G411700 ID=Potri.001G411700.1.v4.1 annot-version=v4.1 ATGGGAGTGTTCTTCGTGAGATCTTTCTTCATCTCCATCTTAACCACTTCCACCGCACTGGAAATCATCAACCCAGGCCAATCATTGAGAGATGGTGAGA CTCTGGTTTCTTCAAGCGGAAGCTTTGAGCTAGGATTTTTCAGCCCTCAAGGTTCAACAAGCAAATACTTGGGATTATGGCTCGACAAGTCTCCTCAGAC AGTTTTATGGGTTGCCAATAGAGAAAATTCACTTTCTGATAATATGGGAGTTCTGAACATCACCACCCAAGGGATTCTAATCCTTCTCAATAGCACAAAC CATATTGTTTGGTCATCAAATTCAAGTGCATCAAGAAATACGCAGAATCCGGTTGCGCAGCTCTTGGATTCTGGAAATTTTGTTGTGAGAGAAGGAAATG ATTATAACCCTGCAAAATTTTTGTGGCAGAGTTTTGATCATCCTTGTGATACCTTACTACCTGGAATGAGAATCGGAGTCAACTTTGTAACACGGATTGA CAGGTTTCTGTCATCTTGGAAGAGCCCAGAAGATCCTGCTCGAGGTGAGTTTACGTTTGGTATCGATCCTCAGGGGTATCCACAGGTACTTTTGAAGAAA GGGAATAGAACAGTGTTTAGAGGGGGGCCATGGACTGGCATAAAATTTACATCAAATCCTAGACCGATACCCAATCAAATTTCCACAAATGAATTTGTGC TCAACAACCAAGAGGTTTATTTCGAGTATAGGATTCAAAGTTCAGTTTCTTCAAAGCTTACACTAAGTCCATTGGGCCTTTCTCAGAGCCTCACATGGAA TGACAGAGCTCAGGACTGGGTGATTGTTGGAAATGGCCAGTACGATCAGTGTGAAGAGTATAAGTTCTGTGGTCCCAACACTCGCTGTGAGATAACTAGA ACTCCTATATGTGTATGCTTGGATGGATTCACGCCTATGTCTCCAGTAGATTGGAATTTTTCAGATTGGTCAGGTGGGTGTCACCGGAGGACTCCATTGA ATTGTAGTGATAAAGATGGCTTTCTCAAGTATACAGCAAATAAACTGCCAGACACATCTTCTTCCTGGTTTGACAAGAGCATTGACCTCAAGGAATGTGA GAGATTGTGTCTGAAGAACTGCTCTTGCACTTCTTATACAAATTTAGATTTCAGGGCAGGTGGAAGTGGCTGCCTTATTTGGTTTGGTGACCTGATTGAT ATGAGAAGGTCAACTGGGGATGGACAAGACGTCTATGTTCGGGTGGCTGATTCGGAATTAGGTGCAAATGCGAAGAAAAGGAACTTGAGTACGAAGTTGA AAGCAGGAATAATTGCCAGCGCCGCTGCATTGGGCATGGGCATGCTATTGGCAGGAATGATGTTCTGCAGGCGGAGGAGGAATCTTGGGAAGAATGATAG ACTTGAAGAAGTAAGGAAAGAGGACATAGAATTACCAATAGTTGATTTGAGTACCATAGCTCATGCCACTGATAACTTTTCAAGCAGCAACAAGTTGGGA GAAGGTGGTTTTGGACCTGTATATAAGGGCATATTGATAGAAGGACAAGAAATAGCGGTGAAAAGGCTTTCAAAGAGTTCTGTTCAAGGGATGGACGAGT TCAAAAATGAAGTTAAATTCATTGCTAAACTTCAGCATCGCAATCTCGTGAAGCTTCTTGGTTACTGCATTCAAGAAGATGAAAATATGTTAATCTATGA ATACATGCCCAATAAAAGTTTGGACTTCTTCATTTTCGACCAAGCAAGAAGAAAATTACTGGATTGGACGAAGCGTATGAACATTATTGGTGGAATTGCT CGAGGGCTGCTTTATCTCCATCAAGACTCTAGACTGAGAGTAATTCATAGAGATATCAAAGCCAGCAACATTTTACTGGATAATGAGCTAAATCCAAAAA TCTCGGACTTTGGCCTTGCTAGAATGTTTCGTGGAGATGAAACAGAGGCCAATACTCATAGGGTGATTGGAACATATGGCTATATGTCTCCTGAGTATGC GTCGAATGGACACTTCTCTGTGAAAACCGACGTCTTTAGCTTTGGTGTCCTCATCCTGGAGATAGTGAGTGGAAAGAAAAATAGGGGATTTCGTCACCCG GATCGAAACCTTAACCTCCTCGGGCATGCGTGGATACTTTGGATAAAAGGAACACCATCGGAACTGATTGATGAATGTTTAGGTTACTTGAGCAATACAT CTGAAGTGTTAAGATGCATTCATGTGGCTTTACTGTGTGTGCAACAACGACCAGAAGATAGGCCAAACATGCCAACTGTGGTTCAAATATTATGCAATGA AAATCCATTGCCTCAGCCTAAACAACCTGGGTTTTTCATGGGAAAGAATCCACTCGAACAGGAAGGTTCATCAAATCAGATGGAAGCTTGCTCTTCAAAT GAAATGAGTTTGACATTGTTAGAGGCACGGTAG
AA sequence Show only first row Show all	>Potri.001G411700.1 pacid=42790591 polypeptide=Potri.001G411700.1.p locus=Potri.001G411700 ID=Potri.001G411700.1.v4.1 annot-version=v4.1 MGVFFVRSFFISILTTSTALEIINPGQSLRDGETLVSSSGSFELGFFSPQGSTSKYLGLWLDKSPQTVLWVANRENSLSDNMGVLNITTQGILILLNSTN HIVWSSNSSASRNTQNPVAQLLDSGNFVVREGNDYNPAKFLWQSFDHPCDTLLPGMRIGVNFVTRIDRFLSSWKSPEDPARGEFTFGIDPQGYPQVLLKK GNRTVFRGGPWTGIKFTSNPRPIPNQISTNEFVLNNQEVYFEYRIQSSVSSKLTLSPLGLSQSLTWNDRAQDWVIVGNGQYDQCEEYKFCGPNTRCEITR TPICVCLDGFTPMSPVDWNFSDWSGGCHRRTPLNCSDKDGFLKYTANKLPDTSSSWFDKSIDLKECERLCLKNCSCTSYTNLDFRAGGSGCLIWFGDLID MRRSTGDGQDVYVRVADSELGANAKKRNLSTKLKAGIIASAAALGMGMLLAGMMFCRRRRNLGKNDRLEEVRKEDIELPIVDLSTIAHATDNFSSSNKLG EGGFGPVYKGILIEGQEIAVKRLSKSSVQGMDEFKNEVKFIAKLQHRNLVKLLGYCIQEDENMLIYEYMPNKSLDFFIFDQARRKLLDWTKRMNIIGGIA RGLLYLHQDSRLRVIHRDIKASNILLDNELNPKISDFGLARMFRGDETEANTHRVIGTYGYMSPEYASNGHFSVKTDVFSFGVLILEIVSGKKNRGFRHP DRNLNLLGHAWILWIKGTPSELIDECLGYLSNTSEVLRCIHVALLCVQQRPEDRPNMPTVVQILCNENPLPQPKQPGFFMGKNPLEQEGSSNQMEACSSN EMSLTLLEAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411700 [exp]	0	1
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Potri.014G135900 [exp]	1.00	0.8962
AT3G20250		APUM5	pumilio 5 (.1)		Potri.008G004300 [exp]	2.00	0.8955
AT2G31945			unknown protein		Potri.009G024300 [exp]	3.00	0.8950
AT1G05280			Protein of unknown function (D...		Potri.017G039600 [exp]	4.00	0.8766
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.006G067300 [exp]	5.29	0.8884
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.005G220700 [exp]	7.41	0.8854	Pt-CYP94.7
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134450 [exp]	7.48	0.8670
AT3G18950			Transducin/WD40 repeat-like su...		Potri.009G109500 [exp]	10.48	0.8706
AT1G03220			Eukaryotic aspartyl protease f...		Potri.002G054900 [exp]	10.67	0.8849
AT4G06536			SPla/RYanodine receptor (SPRY)...		Potri.014G025000 [exp]	11.00	0.8688

Compare expression of checked genes

Potri.001G411700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.