Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11330 600 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11350 587 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G61420 545 / 0 S-locus lectin protein kinase family protein (.1) AT1G61550 543 / 0 S-locus lectin protein kinase family protein (.1) AT1G61480 542 / 0 S-locus lectin protein kinase family protein (.1) AT1G11280 537 / 8e-180 S-locus lectin protein kinase family protein (.1.2.3.4) AT1G61360 517 / 6e-172 S-locus lectin protein kinase family protein (.1.2) AT4G11900 487 / 5e-160 S-locus lectin protein kinase family protein (.1) AT4G27300 454 / 1e-147 S-locus lectin protein kinase family protein (.1) AT4G27290 433 / 4e-140 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G128900 [exp] 1266 / 0 AT4G27290 834 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128800 [exp] 1039 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125901 [exp] 1025 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 1019 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126151 [exp] 1013 / 0 AT4G27290 868 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128700 [exp] 1002 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126201 [exp] 999 / 0 AT4G27290 833 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018600 [exp] 997 / 0 AT4G27290 853 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413300 [exp] 992 / 0 AT4G27290 830 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038552 [exp] 862 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 784 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 776 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 768 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10016871 [exp] 756 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 750 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10014812 [exp] 741 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014808 [exp] 701 / 0 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016862 [exp] 684 / 0 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014810 [exp] 641 / 0 AT4G27290 692 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.001G412100.1 pacid=42792714 polypeptide=Potri.001G412100.1.p locus=Potri.001G412100 ID=Potri.001G412100.1.v4.1 annot-version=v4.1 ATGGATTACTTTAGTGTGCTTCTTTTTTGCTCCTCTTTGTTGCTGATTATAATACCATCCACAGCAGTTGACTCCATAAATACAACTCAATCATTTAGAG ATGGGGATTCCATTGTTTCAGCTAGTGGAAGCTTTAAACTGGGATTTTTCAGCTTCGGCAGCTCCATCAACCGTTACTTGTGCATATCGTACAACCAAAT ATCTACCACGACTATAGTTTGGGTTGCTAACAGAGGAACCCCGCTTAATGATTCTTCAGGTGTTTTAAGGATTACTAGCCAAGGAATTCTTATCCTTGTT GATCAAAGTGGGAGCACAATATGGTCTTCCAACTCATCAAGGTCTGCGAGAAATCCGATTGCGCAGCTTTTGGATTCAGGAAACCTTGTTGTGAAAGAGG AGGGTGATGGTAACCTGGAAAATCCCTTGTGGCAGAGTTTTGACTATCCTGGTGATACGTTCCTGCCAGAGATGAAGCTTGGAAGGAATAAAGTAACAAG TCTGGATCGGTACATATCATCATGGAAGTCAGCTGATGACCCTTCTAGAGGTAATTATACTTTCAGACTTGATCCTGCTGCATATTCTGAGTTAATTATG ATAGAGGACTCAAACGAGAAGTTTCGGTCCGGACCATGGAATGGTATGCGGTTCAGTGGTACTCCTCAACTGAAACCAAATCCAATATACACATACAGAT TCTTTTATGATGGTGATGAGGAATACTACACCTATAAGCTTGTTAACAGCTCATTTCTTTCAAGGATGGTGATAAACCAGAATGGTGCTATCCAGCGCTT CACCTGGATTGATCGAACGCAATCTTGGGAACTTTATCTTTCAGTGCAAACTGATAATTGCGATCGTTATGCACTTTGTGGCGCATATGCCACCTGTAGT ATCAACAACTCCCCTGTATGTAGTTGTTTGGTAGGATTTTCTCCAAATGTTTCTAAAGACTGGGACACAATGGATTGGACAAGTGGTTGTGTTAGAAAGA CTCCATTGAATTGCTCTGAAGATGGGTTTCGAAAGTTCTCTGGCGTAAAGTTGCCTGAAACAAGAAAATCCTGGTTTAACAGGACCATGAGTCTTGACGA GTGCAGAAGCACATGCCTGAAGAACTGCTCCTGTACAGCTTATACAAATTTGGACATCAGCATTAATGGAGGGAGTGGATGCTTGCTCTGGTTAGGTGAC CTGGTTGATATGAGACAGATCAATGAAAATGGGCAAGATATTTATATAAGGATGGCTGCATCAGAACTAGAAAAAGCTGGTTCCGCAGAGGCCAAATCCA AAGAGAAAAAACGAACGTGGAGCATAATAATTTCTGTGTTATCTATAGCAGTGGTCTTCAGTCTAGCCTTGATCCTGCTTGTCCGGAGAAAGAAGATGCT GAAAAACAGAAAAAAGAAAGATATTCTGGAACCAAGTCAAAATAACCAGGGCGAGGAGGAAGATCTAAAATTGCCTTTGTTTGATTTAAGTACGATGTCT CGTGCCACCAACGACTTTTCTCTGGCCAATATACTCGGAGAAGGTGGTTTTGGAACTGTCTATCAGGGAAAGCTAAACGATGGACAAGAAATAGCTGTGA AGAGGCTTTCAAAGACTTCAAAACAAGGACTCGATGAATTCAAAAACGAAGTCTTGCATATTGTGAAACTTCAGCATCGAAATCTAGTGAAGCTTCTAGG TTGCTGCATTGAAGGTGATGAAACGATGCTGATCTATGAGATGATGCCCAACAAAAGCTTGGACTTCTTTATCTTCGATAAAACAAGGGACAAGGTACTA GACTGGCCTCAACGCTTCCACATTATCAATGGGATTGCTCGGGGACTCCTTTATCTTCACCAAGATTCGAGACTAAGAATAATTCATAGAGATCTGAAAG CCAGCAACATTTTATTAGATCATGAAATGAACCCAAAAATTTCTGATTTTGGCCTGGCTAGAAGTGTCGGAGGAAACGAAACTGAAGCCAATACAAATAA GGTGGTGGGAACATATGGCTACATAGCACCAGAGTATGCAATTGATGGACTCTACTCTGTGAAATCAGATGTCTTCAGCTTTGGTGTAATGGTGCTAGAG ATAGTGAGTGGCAAGAGAAATAAAGGATTTTGTCATCCAGACCACAAGCAGAACCTTCTCGGACATGCATGGAGACTATTTATAGAAGGCAGGTCCTCAG AGCTTATTGTAGAATCAATTGTAGAATCATGCAATTTCTATGAAGTACTGCGTTCGATACATATAGGTCTATTATGTGTGCAACGCAGTCCGAGAGATAG GCCAAGCATGTCAACAGTGGTTATGATGTTGGGCAGTGAAAGTGAATTGCCTCAGCCGAAAGAACCTGGTTTTTTTACCACAAGGGATGTTGGTAAAGCA ACTTCTTCATCAACTCAGAGCAAGGTTTCAGTAAATGAAATCACCATGACACAACTAGAAGCAAGATAG
AA sequence Show only first row Show all	>Potri.001G412100.1 pacid=42792714 polypeptide=Potri.001G412100.1.p locus=Potri.001G412100 ID=Potri.001G412100.1.v4.1 annot-version=v4.1 MDYFSVLLFCSSLLLIIIPSTAVDSINTTQSFRDGDSIVSASGSFKLGFFSFGSSINRYLCISYNQISTTTIVWVANRGTPLNDSSGVLRITSQGILILV DQSGSTIWSSNSSRSARNPIAQLLDSGNLVVKEEGDGNLENPLWQSFDYPGDTFLPEMKLGRNKVTSLDRYISSWKSADDPSRGNYTFRLDPAAYSELIM IEDSNEKFRSGPWNGMRFSGTPQLKPNPIYTYRFFYDGDEEYYTYKLVNSSFLSRMVINQNGAIQRFTWIDRTQSWELYLSVQTDNCDRYALCGAYATCS INNSPVCSCLVGFSPNVSKDWDTMDWTSGCVRKTPLNCSEDGFRKFSGVKLPETRKSWFNRTMSLDECRSTCLKNCSCTAYTNLDISINGGSGCLLWLGD LVDMRQINENGQDIYIRMAASELEKAGSAEAKSKEKKRTWSIIISVLSIAVVFSLALILLVRRKKMLKNRKKKDILEPSQNNQGEEEDLKLPLFDLSTMS RATNDFSLANILGEGGFGTVYQGKLNDGQEIAVKRLSKTSKQGLDEFKNEVLHIVKLQHRNLVKLLGCCIEGDETMLIYEMMPNKSLDFFIFDKTRDKVL DWPQRFHIINGIARGLLYLHQDSRLRIIHRDLKASNILLDHEMNPKISDFGLARSVGGNETEANTNKVVGTYGYIAPEYAIDGLYSVKSDVFSFGVMVLE IVSGKRNKGFCHPDHKQNLLGHAWRLFIEGRSSELIVESIVESCNFYEVLRSIHIGLLCVQRSPRDRPSMSTVVMMLGSESELPQPKEPGFFTTRDVGKA TSSSTQSKVSVNEITMTQLEAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11330			S-locus lectin protein kinase ...		Potri.001G412100 [exp]	0	1
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.001G334700 [exp]	1.41	0.9274
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.001G082150 [exp]	1.73	0.9332
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Potri.017G078100 [exp]	3.46	0.9262
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Potri.006G133300 [exp]	3.87	0.9100
AT3G07565			Protein of unknown function (D...		Potri.007G132700 [exp]	6.63	0.8888
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Potri.002G021500 [exp]	9.38	0.8776	CYP1.2
AT1G06540			unknown protein		Potri.005G201300 [exp]	9.59	0.9119
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Potri.018G009200 [exp]	11.31	0.8667	Pt-ATCNGC14.1
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Potri.003G141000 [exp]	12.00	0.8496
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Potri.004G047700 [exp]	13.19	0.9013

Compare expression of checked genes

Potri.001G412100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.