Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65790 206 / 2e-62 ARK1 receptor kinase 1 (.1) AT4G27290 204 / 8e-62 S-locus lectin protein kinase family protein (.1) AT4G27300 204 / 9e-62 S-locus lectin protein kinase family protein (.1) AT1G65800 199 / 7e-60 ARK2 receptor kinase 2 (.1) AT4G21380 199 / 7e-60 ARK3 receptor kinase 3 (.1) AT4G03230 194 / 1e-57 S-locus lectin protein kinase family protein (.1) AT4G23150 184 / 5e-55 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23180 183 / 9e-55 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23140 182 / 2e-54 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT1G11330 181 / 2e-53 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G018050 [exp] 313 / 1e-109 AT4G27300 310 / 2e-100 S-locus lectin protein kinase family protein (.1) Potri.010G025700 [exp] 309 / 9e-104 AT4G27290 576 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018600 [exp] 312 / 2e-102 AT4G27290 853 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017450 [exp] 310 / 9e-102 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018300 [exp] 309 / 2e-101 AT4G27290 841 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G015400 [exp] 305 / 3e-101 AT4G27290 683 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G025800 [exp] 309 / 4e-101 AT4G27290 828 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G020300 [exp] 306 / 6e-100 AT4G27290 832 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 305 / 1e-99 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014811 [exp] 243 / 3e-76 AT4G27290 808 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 242 / 1e-75 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 237 / 9e-74 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 228 / 2e-70 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 228 / 2e-70 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 214 / 2e-65 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038554 [exp] 213 / 8e-65 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 202 / 4e-62 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018405 [exp] 200 / 5e-60 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10007602 [exp] 199 / 5e-60 AT1G65800 788 / 0.0 receptor kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.001G412377.1 pacid=42789185 polypeptide=Potri.001G412377.1.p locus=Potri.001G412377 ID=Potri.001G412377.1.v4.1 annot-version=v4.1 ATGAATCCAAAAATTTCAGACTTTGGCCTGGCTAGATGTTTTGGAGGAAATGAAACTGAAGCCAACACAAACAAAGTGGCTGGTACATATGGCTACATAT CCCCAGAGTACGCAAATTATGGACTCTACTCGCTAAAATCTGATGTCTTCAGCTTTGGTGTATTGGTGCTAGAGATAGTAAGTGGGTACAGGAACAGAGG ATTCTGCCACCCAGACCACCAACTCAACCTTCTTGGGCATGCTTGGAGACTGTTTAAAGAAGGCAGGCATGTGGAGCTGGTTGGGGGATTAATATTTGAA ACTTGCAAATTATCTGAAGTTCTACGGTCGATTCACATAGGTCTATTATGTGTGCAAGAAAATGCAAAAGATAGGCCGAACATGTCACAGGTGGTTTTGA TGCTGGGTAATGAAGATGAATTGCCTCAGCCTAAACATCCAGGTTTTTTTACTGGAAGGGATCTTATTGAAGCAAGCCATTCATTAAGTCAGAACAAACC ATGTTCTGCAAACGGATGCTCGGTCTCCCTGTTAGAGGCACGGTAG
AA sequence Show only first row Show all	>Potri.001G412377.1 pacid=42789185 polypeptide=Potri.001G412377.1.p locus=Potri.001G412377 ID=Potri.001G412377.1.v4.1 annot-version=v4.1 MNPKISDFGLARCFGGNETEANTNKVAGTYGYISPEYANYGLYSLKSDVFSFGVLVLEIVSGYRNRGFCHPDHQLNLLGHAWRLFKEGRHVELVGGLIFE TCKLSEVLRSIHIGLLCVQENAKDRPNMSQVVLMLGNEDELPQPKHPGFFTGRDLIEASHSLSQNKPCSANGCSVSLLEAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65790		ARK1	receptor kinase 1 (.1)		Potri.001G412377 [exp]	0	1
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G023016 [exp]	4.12	0.6997
AT1G53050			Protein kinase superfamily pro...		Potri.005G086900 [exp]	16.94	0.6139
AT1G52140			unknown protein		Potri.003G049800 [exp]	24.67	0.6313
					Potri.012G017950 [exp]	27.83	0.5524
					Potri.018G056301 [exp]	27.92	0.5846
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Potri.009G121600 [exp]	31.22	0.6276
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188200 [exp]	31.46	0.6043
AT4G27290			S-locus lectin protein kinase ...		Potri.001G418100 [exp]	31.62	0.6061
					Potri.018G077983 [exp]	31.74	0.5901
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.008G011461 [exp]	35.49	0.5028

Compare expression of checked genes

Potri.001G412377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.