Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 315 / 2e-101 S-locus lectin protein kinase family protein (.1) AT4G21380 243 / 2e-73 ARK3 receptor kinase 3 (.1) AT3G12000 218 / 2e-67 S-locus related protein SLR1, putative (S1) (.1) AT1G11410 218 / 1e-64 S-locus lectin protein kinase family protein (.1) AT1G11340 218 / 3e-64 S-locus lectin protein kinase family protein (.1) AT1G65800 206 / 5e-60 ARK2 receptor kinase 2 (.1) AT2G19130 202 / 1e-58 S-locus lectin protein kinase family protein (.1) AT1G11300 202 / 3e-58 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT4G21390 201 / 3e-58 B120 S-locus lectin protein kinase family protein (.1) AT1G61390 201 / 5e-58 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G128800 [exp] 528 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G025500 [exp] 512 / 0 AT4G27290 472 / 7e-159 S-locus lectin protein kinase family protein (.1) Potri.011G125901 [exp] 516 / 1e-178 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017800 [exp] 501 / 1e-178 AT4G27290 462 / 1e-156 S-locus lectin protein kinase family protein (.1) Potri.010G025800 [exp] 513 / 7e-178 AT4G27290 828 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017450 [exp] 513 / 7e-178 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G020200 [exp] 498 / 9e-176 AT4G27290 517 / 3e-176 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 507 / 3e-175 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G154400 [exp] 500 / 9e-175 AT4G27290 682 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014808 [exp] 330 / 6e-108 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 308 / 4e-98 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 301 / 2e-95 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038553 [exp] 301 / 3e-95 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014811 [exp] 292 / 3e-92 AT4G27290 808 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 284 / 5e-89 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10014813 [exp] 281 / 7e-88 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 279 / 3e-87 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 269 / 3e-83 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 253 / 2e-77 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.001G412454.1 pacid=42787786 polypeptide=Potri.001G412454.1.p locus=Potri.001G412454 ID=Potri.001G412454.1.v4.1 annot-version=v4.1 ATGAAATACTTTCCCATGCTTCTATTCTGCTCCTCTTTGTTGTTAATCATAGAAAGTTCCACTGCAATTGATACCATAAATACAACTCAGCTTGTTAGAG AAGGTGATACCATTGTTTCAGCAGGCGGAACCTATGAATTAGGTTTTTTCAGCCCAGGTAAATCGAAAAACCGGTACTTGGGGATATGGTACAGCAAAAT ATCTGTGCAGACTGCAGTTTGGGTTGCCAACAGAGAAACTCCACTTAATGACTCATCAGGAGTAATTTTAAGGCTTACCAACCAAGGAATCCTTGTTCTT CTCAATCGGAGTGGGAGCTTGATATGGTCTTCTAACATATCGAGACCTGCGAAGAATCCAGTTGCACAGCTTTTGGATTCAGGAAATCTTGTTGTGAAAG AGGAGGGTGATGATAACTTGGAAAATTCCTTGTGGCAGAGTTTTGAACATCCAGGTGATACGTTCATGCCAGACATGAAGCAAGGACGGAATAGAATAAC AGGCATGGACTGGTACATGACATCATGGAAGTCACCTGATGATCCTTCCAGAGGTAATATTACATATATACTTGTTCCTTATGGATATCCTGAGATTCTT GTGATGGAGGATTCGAGGGTGAAGTATCGGTCTGGTCCATGGAATGGTATGCGGTTCAGCGGGACGCCTCATTTAAAACCAAATCCCGTATACACATTTG GATTTGTTTTTAACGACAAGGAGATATTTTACAGATATCATCTTCTTAATAGCTCTAAACTTTGGAGGGTCGTGGCAAGTCAGAATGGTGATATCACGAA CTTTGTTTGGGTTGATAAAACACAAAGTTGGCTGCTTTATGGCACAGCAAATACAGATAATTGTGAACGCTATTCACTATGCGGTGCGAATGGCATCTGT AGTATAAGCAACTCTCCAGTGTGTGATTGCTTGAATGGATTTGTTCCAAAAATTAAAAAGACTGGGATGCAATGGATTGGTCAAGTGGCTGTGTTAGAAA GATTCCTCTAA
AA sequence Show only first row Show all	>Potri.001G412454.1 pacid=42787786 polypeptide=Potri.001G412454.1.p locus=Potri.001G412454 ID=Potri.001G412454.1.v4.1 annot-version=v4.1 MKYFPMLLFCSSLLLIIESSTAIDTINTTQLVREGDTIVSAGGTYELGFFSPGKSKNRYLGIWYSKISVQTAVWVANRETPLNDSSGVILRLTNQGILVL LNRSGSLIWSSNISRPAKNPVAQLLDSGNLVVKEEGDDNLENSLWQSFEHPGDTFMPDMKQGRNRITGMDWYMTSWKSPDDPSRGNITYILVPYGYPEIL VMEDSRVKYRSGPWNGMRFSGTPHLKPNPVYTFGFVFNDKEIFYRYHLLNSSKLWRVVASQNGDITNFVWVDKTQSWLLYGTANTDNCERYSLCGANGIC SISNSPVCDCLNGFVPKIKKTGMQWIGQVAVLERFL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412454 [exp]	0	1
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.005G053500 [exp]	2.44	0.8469
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.001G066900 [exp]	4.58	0.8038
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Potri.006G184800 [exp]	6.32	0.7992
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Potri.005G055300 [exp]	6.92	0.7823	WRKY39.1
AT2G46420			Plant protein 1589 of unknown ...		Potri.012G001700 [exp]	8.36	0.7757
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.013G041000 [exp]	9.21	0.7955
AT5G24010			Protein kinase superfamily pro...		Potri.004G079700 [exp]	10.95	0.7924
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.005G170500 [exp]	14.00	0.7650	Pt-TGA3.2
AT5G60580			RING/U-box superfamily protein...		Potri.009G013300 [exp]	15.09	0.7731
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.004G043500 [exp]	16.73	0.7865

Compare expression of checked genes

Potri.001G412454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.