Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 782 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 721 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 692 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 688 / 0 ARK2 receptor kinase 2 (.1) AT4G27300 679 / 0 S-locus lectin protein kinase family protein (.1) AT1G11340 646 / 0 S-locus lectin protein kinase family protein (.1) AT1G11300 639 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11410 637 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 634 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 621 / 0 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125901 [exp] 1196 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125751 [exp] 1184 / 0 AT4G27290 824 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126201 [exp] 1182 / 0 AT4G27290 833 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017450 [exp] 1180 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413000 [exp] 1178 / 0 AT4G27290 827 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128700 [exp] 1177 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126001 [exp] 1176 / 0 AT4G27290 824 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413300 [exp] 1176 / 0 AT4G27290 830 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126101 [exp] 1174 / 0 AT4G27290 817 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033365 [exp] 846 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038553 [exp] 838 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 829 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 803 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 796 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10038557 [exp] 788 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 786 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 763 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 758 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10014812 [exp] 756 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.001G412700.1 pacid=42792049 polypeptide=Potri.001G412700.1.p locus=Potri.001G412700 ID=Potri.001G412700.1.v4.1 annot-version=v4.1 ATGGATTACATCCCTTCTTTTCTCTTAACGTTATTGCTTATAGGAGAAGCAGCCGAAGGTATTGATACCATGAACACAACTCATTCCATTAGAGATGGTG ATACAATTGTTTCAGCAGAAGGGACCTATGTATTAGGATTTTTCAGCCCTGGAAAATCAAAAAACCGATACGTGGGGATTTGGTATGGCAGAATACCTGT CATCACTGTAGTTTGGGTTGCCAACAGAGAAACCCCCCTTAATGATTCTTCAGGCGTTTTCAGACTTACTAACGAAGGAAGTCTTGTCCTTCTCGATCAT GATAGGAGCTTGATTTGGTCCTCTAACTCGTCGAGACCAGCAACTAATCCAGCAGCTCAACTTCTGGATTCAGGAAACCTTGTTGTGAAGGAGAAGGGTG ATGGCAGCCTGGAAAATCCCTTGTGGCAGAGTTTTGAACACCCAACTGATACTCTATTGCCAGAAATGAAGCTAGGACGGAATAAAATAACGGGCATGGA CTGGAACATGACATCATGGAAGTCACCGGATGATCCTTCCAGAGGTAACTTTACATGTATCCTTGTTCCTCATGGATATTCTGAGGTACTACTGATGGAT AATTCGAAAGTGAGGCACCGGTCAGGGCCATGGAATGGCGTGCGGTACAGTGGTACACCGTATTTAAGACCAAATCCCTTGTACACATATGAATTCGTTT CCAATGAGAAGGAGATATTTTTCAGGGAGCATCTTGTTAACAAATCAACACATTGGAGGATCGTGATAACTCACGATGGTGAAAACCACAACTTCGTGTG GATTGAGAGCACACAGAGTTGGTTGCTATACGAGATAGGAAATACTGATAATTGTGGAAGGTATGCACTGTGTGGTGCAAATGGTATCTGTAGTATTCAC AACTCTCCTTTCTGTGATTGCTTGAAAGGATTTGTACCAAATAACTCAAGAGATTGGAACAAGATGGATTGGTCAAAAGGTTGTGTAAGAAAGACTCCAC TAAATTGTTCTGGTGATGGGTTTCAAAAGCTTTCTAAAGCGAAATTGCCTGAGATAAAATCATCTTGGATTAACTCGAGCATGAATCTTGAGGAGTGCAA GAACACGTGCTTAAAGAACTGCAGCTGTACAGCATATTCAAATTTGGACATCAGGAATGGAGGAAGTGGGTGCTTGCTTTGGTTCGGTGACCTGATTGAT ATTAGAATACTTTCTGAAAACGATCAAGATGTTTATATACGGATGGCGGCATCAGATCTAGATAATGGTGACTTCTTGAAGATTCATACAAAATCCAATG TAAAGAGAAGGATCATAGTAAGCTCCGCATTGTCTACAGCTATTCTCTTCCTTGTCCTTGCCTTGTTCTTGTATGTTTGGAAAAAGAAGCAGCAAAAAAA CGGTGCTTTGCAAAGAAATCCACATAAGAAAGATGATTTGGACTTACCGTTGTTTGATTTGGGTACCGTGGCTCGTGCAACAAATAACTTTTCTGTTGAA AATAAACTCGGAGAAGGGGGCTTCGGACCTGTTTATAAGGGAACACTGAGAGATGGACGAGAAATAGCTGTGAAGAGGCTTTCTAATAATTCAAGACAAG GAGTTGATGAGTTCAAAAATGAAGTTAAGTGTATTGTGAAACTTCAACATCAGAATCTGGTGAAGCTTCTAGGATGCTGCATTGAAGGAGATGAAACGAT GCTCATCTACGAGTTTTTGCCTAACAAAAGCTTGAACTTTTTTATTTTCGGTGAAACAAAGGACAGGCTGCTAGATTGGCCGACACGCTACAACATCATC AATGGGATTGTTCGTGGACTTCTTTATCTTCACCAGGATTCAAGACTAAGGGTAATTCATAGAGATTTGAAAGCCAGCAATATTTTACTCGACTATAAAC TGAAACCAAAAATTTCAGACTTTGGACTGGCTAGAAGTTTTGTAGGAAATGAAATCGAAGCCAACACTAATAAAGTGGCTGGTACATATGGCTACATATC TCCAGAGTACGCAAATCATGGAGTCTACTCGCTAAAATCAGACGTCTTCAGCTTTGGAGTCTTGGTGCTAGAGATAGTGAGTGGGAACAGGAACAGAGGA TTCTGTCATCCGAATCATAGCCTCAACCTTCTAGGGCATGCTTGGAGACTTTTCCAAGAAGGGAGGCCTATAGAACTGGTTTCGGAATCAATAATTGAAT CATTCAATCGATCTCAAGTGTTACGTTCAATTCATGTGGCTCTTCTCTGTGTGCAAGAAAATCGAGAAGATAGGCCGAACATGTCATATGTGGTTTTGAT GTTGGGTAATGAAGATGCATTGCCTCGGCCTAAGCATCCAGGTTTCTTCATTGAAAGGGATGCTATTGAAGAAAGTTTACCAAAACCATTATCAGAAAAC GAATGCTCGATTTCACTGTTAGATGCAAGATTCATAGAAGACTTCAAAGGGCACGCTAAGGTGTAA
AA sequence Show only first row Show all	>Potri.001G412700.1 pacid=42792049 polypeptide=Potri.001G412700.1.p locus=Potri.001G412700 ID=Potri.001G412700.1.v4.1 annot-version=v4.1 MDYIPSFLLTLLLIGEAAEGIDTMNTTHSIRDGDTIVSAEGTYVLGFFSPGKSKNRYVGIWYGRIPVITVVWVANRETPLNDSSGVFRLTNEGSLVLLDH DRSLIWSSNSSRPATNPAAQLLDSGNLVVKEKGDGSLENPLWQSFEHPTDTLLPEMKLGRNKITGMDWNMTSWKSPDDPSRGNFTCILVPHGYSEVLLMD NSKVRHRSGPWNGVRYSGTPYLRPNPLYTYEFVSNEKEIFFREHLVNKSTHWRIVITHDGENHNFVWIESTQSWLLYEIGNTDNCGRYALCGANGICSIH NSPFCDCLKGFVPNNSRDWNKMDWSKGCVRKTPLNCSGDGFQKLSKAKLPEIKSSWINSSMNLEECKNTCLKNCSCTAYSNLDIRNGGSGCLLWFGDLID IRILSENDQDVYIRMAASDLDNGDFLKIHTKSNVKRRIIVSSALSTAILFLVLALFLYVWKKKQQKNGALQRNPHKKDDLDLPLFDLGTVARATNNFSVE NKLGEGGFGPVYKGTLRDGREIAVKRLSNNSRQGVDEFKNEVKCIVKLQHQNLVKLLGCCIEGDETMLIYEFLPNKSLNFFIFGETKDRLLDWPTRYNII NGIVRGLLYLHQDSRLRVIHRDLKASNILLDYKLKPKISDFGLARSFVGNEIEANTNKVAGTYGYISPEYANHGVYSLKSDVFSFGVLVLEIVSGNRNRG FCHPNHSLNLLGHAWRLFQEGRPIELVSESIIESFNRSQVLRSIHVALLCVQENREDRPNMSYVVLMLGNEDALPRPKHPGFFIERDAIEESLPKPLSEN ECSISLLDARFIEDFKGHAKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412700 [exp]	0	1
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073641 [exp]	1.41	0.9376
AT4G00350			MATE efflux family protein (.1...		Potri.017G016450 [exp]	22.27	0.8259
					Potri.008G155600 [exp]	25.98	0.8831
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.005G008901 [exp]	26.83	0.8866
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Potri.014G125400 [exp]	30.00	0.8661	Pt-ARR5.2
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.003G057250 [exp]	37.46	0.8496
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073041 [exp]	38.53	0.8326
					Potri.001G076350 [exp]	40.95	0.8567
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Potri.007G066700 [exp]	44.27	0.8866
AT5G09280			Pectin lyase-like superfamily ...		Potri.001G007400 [exp]	53.94	0.8822

Compare expression of checked genes

Potri.001G412700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.