Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36740 350 / 7e-120 ATSWC2 sequence-specific DNA binding transcription factors;DNA binding;DNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G127200 [exp] 39 / 0.001 AT4G38495 167 / 1e-54 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020396 [exp] 359 / 3e-123 AT2G36740 411 / 1e-143 sequence-specific DNA binding transcription factors;DNA binding;DNA binding (.1) Lus10009576 [exp] 305 / 3e-102 AT2G36740 351 / 4e-120 sequence-specific DNA binding transcription factors;DNA binding;DNA binding (.1) Lus10029400 [exp] 45 / 5e-06 AT4G38495 100 / 4e-29 unknown protein Lus10004196 [exp] 43 / 4e-05 AT4G38495 166 / 2e-54 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05764 [poplar] [flax] YL1 YL1 nuclear protein PF08265 [poplar] [flax] YL1_C YL1 nuclear protein C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G412800.1 pacid=42792497 polypeptide=Potri.001G412800.1.p locus=Potri.001G412800 ID=Potri.001G412800.1.v4.1 annot-version=v4.1 ATGGAAGTCTCTAAGGAAGATGATTCACTTATGCTTCTGGACCGAGCCTCTCGAGCAACAAGAGGAAAACGGATGACCAAGTTGATTGACGATGAACTTG AAGAGGACGAGTTGTTTTGGAACCAGGAAGCTCTTAAAGATGAAGAGGATGATGATAATTATCAAGAGGAGGGAGAGGCTGTTGATGAGTTTGATAGTGA CTTTGACGAAGACGAGCCTGAGCCAGATGAAGCAGAAAAGGAAGTAGAAGAAAGGCCGCAGAACAAGAAGCGGCTTATATTTCCTGGAAAGACTTTACCA AAGAAGAAAACGAAAAAGAAAGACCTTTCAAAATTAGATAAGCTTTCCATGAATGAAAAATCAACTCAACAACCTGCTACTCCTGACCATCAAGATGCTC CTGATGACGTGGAAGGGGAAAGAATAGTGAGGAAATCTACAAGAACCTCAGTCATTGTTAGGCAAGCTGAGAGAGATGCAATACGTGCAGCTTTGCAGGC AACAATGAAGCCAATAAAAAGAAAAAAAGAAGGCGAGGAGAAGAGGATGACACAAGAAGAAATGCTTCTTGAAGCAGCACAGACAGAAATCGTGAATTTA AGGAACTTAGAGCGTGTTTTAGCAAGGGAGGAAGAAGTTAAGAAAAGAGCAATTGTGCACAAAGCTGTGTACAGTGGCCCACAGATTCGATATTTTTCTA AAAATGGTTGCTCCTATCTAGAATTCAAAGGATTGTCGTTTCAGTCACAGCTTTCAACAACATCTGTTCCATATCCAGAGAAGGCTATATGTGCTGTAAC AGGATTGCCTGCCAAGTATTGTGATCCAAAGACAGGGCTACCTTATGCAACAAAAGAAGCTTTCAAAATTATTCGTGAACGTTTTATGGATGAAAATAAC AATATCAAGAAAATGGCCATGGGTGATCTATTTGATTCACTAGTTGGGACTGGATTTCATGGCAAGAGGAAGCGATTGCCAACTTCAAATAGACGCAAAA TGTCACATTTCTCCCGTTTTGCTAATTTTGGTATGACTTCTATTGTTGATATTGAATCTTCAGAATAG
AA sequence Show only first row Show all	>Potri.001G412800.1 pacid=42792497 polypeptide=Potri.001G412800.1.p locus=Potri.001G412800 ID=Potri.001G412800.1.v4.1 annot-version=v4.1 MEVSKEDDSLMLLDRASRATRGKRMTKLIDDELEEDELFWNQEALKDEEDDDNYQEEGEAVDEFDSDFDEDEPEPDEAEKEVEERPQNKKRLIFPGKTLP KKKTKKKDLSKLDKLSMNEKSTQQPATPDHQDAPDDVEGERIVRKSTRTSVIVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEEMLLEAAQTEIVNL RNLERVLAREEEVKKRAIVHKAVYSGPQIRYFSKNGCSYLEFKGLSFQSQLSTTSVPYPEKAICAVTGLPAKYCDPKTGLPYATKEAFKIIRERFMDENN NIKKMAMGDLFDSLVGTGFHGKRKRLPTSNRRKMSHFSRFANFGMTSIVDIESSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36740		ATSWC2	sequence-specific DNA binding ...		Potri.001G412800 [exp]	0	1
AT3G60410			Protein of unknown function (D...		Potri.014G044800 [exp]	1.41	0.7675
AT5G22080			Chaperone DnaJ-domain superfam...		Potri.001G215800 [exp]	2.23	0.8420
AT4G15030			unknown protein		Potri.001G266200 [exp]	15.19	0.7593
AT3G02490			Pentatricopeptide repeat (PPR)...		Potri.004G108000 [exp]	15.87	0.7353
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Potri.002G175000 [exp]	20.24	0.7144	Pt-RSP31.2
					Potri.014G022050 [exp]	22.44	0.7116
					Potri.015G008200 [exp]	31.93	0.7052
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Potri.017G107900 [exp]	37.34	0.7070
AT5G45790			Ubiquitin carboxyl-terminal hy...		Potri.016G030300 [exp]	50.19	0.7073
					Potri.007G026601 [exp]	55.96	0.6697

Compare expression of checked genes

Potri.001G412800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.