Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34240 678 / 0 ALDH3I1 aldehyde dehydrogenase 3I1 (.1.2) AT1G44170 655 / 0 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT4G36250 480 / 3e-166 ALDH3F1 aldehyde dehydrogenase 3F1 (.1) AT3G66658 172 / 4e-47 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G74920 162 / 8e-44 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G79440 151 / 1e-39 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G48170 145 / 8e-38 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G23800 129 / 5e-32 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48000 128 / 2e-31 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G24503 115 / 3e-27 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G069800 [exp] 955 / 0 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.005G179300 [exp] 677 / 0 AT1G44170 736 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.002G081800 [exp] 665 / 0 AT1G44170 731 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.001G259100 [exp] 493 / 3e-171 AT4G36250 556 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.007G017100 [exp] 466 / 8e-161 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.008G106000 [exp] 172 / 2e-46 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.012G075600 [exp] 157 / 1e-41 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.015G070600 [exp] 153 / 2e-40 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 148 / 1e-38 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015688 [exp] 715 / 0 AT4G34240 674 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Lus10037694 [exp] 702 / 0 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10029684 [exp] 676 / 0 AT1G44170 742 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10025681 [exp] 652 / 0 AT1G44170 743 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10018153 [exp] 649 / 0 AT1G44170 734 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10042724 [exp] 553 / 0 AT1G44170 605 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10041806 [exp] 458 / 3e-157 AT4G36250 640 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10031280 [exp] 451 / 8e-155 AT4G36250 555 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10028357 [exp] 450 / 4e-154 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10002557 [exp] 469 / 1e-153 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [poplar] [flax] ALDH-like PF00171 [poplar] [flax] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Potri.001G412900.1 pacid=42788352 polypeptide=Potri.001G412900.1.p locus=Potri.001G412900 ID=Potri.001G412900.1.v4.1 annot-version=v4.1 ATGAGAAGCCTCTGTGTTGAGCCCTTTCAAAATCTCAGTGTTGTTGATACTGGTGCGAGGAGAGCTTTCACCCACTGCTCTCCGTGGAAGACCAATCATA AGCACGAAGCTGTCCTTTCGTTCCCTCTCTCCAGCCCCATTCGTAAATCACTCTGTATTTGCCTCTCCTCTTCTGCAAATCTACCGGTAATGATGGAGGA GAAGAAGCAAACTTTTGATGCGAATGAAGCTGCTTGGCTAGTTAAGGAACTAAATGAAAGCTTCAGAACTGGCAAGACAAAGAGTTATGAGTGGAGAGTG TCACAATTGAAGGGTATTGAAAAGATGGTTGTGGAAAGGGAGAAGGATATTAGTGAAGCCCTTTATAAGGACCTCTCTAAGCCTGAATATGAAGCCTTTG TTTCTGAGATTGCTATGGTAAAATCGTCTTGCGAGGAGGCACTTAAAGAATTGAAACAGTGGATGAAGCCAGAAAAGGCCAAAACCTCAATGGCAACCTA TCCTTCTTCAGCGGAAATTGTGTCAGAACCTCTCGGAGCTGTGTTGGTCATCTCAACTTGGAACTACCCATTTTCGTTGTCAGTTAAACCTGTCATTGGG GCTATCACAGCTGGAAATGCTGTGGTATTAAAACCTTCAGAAATTGCTCCAGCTACTTCTTCACTGCTTTCAAAATTATTTGAGGAATATCTAGACAGAT CTGCTGTAAGAGTACTCGAGGGAGGTGTTCTTGAAACAACTGCATTGCTTGATCAGAAGTGGGACAAAATATTCTACACAGGGAGTCCAAGAGTAGGGCG CATTGTCATGACTGCTGCAGCAAAGCACCTTACTCCTGTTGTCCTAGAACTTGGAGGGAAGTGCCCAGCTGTTATTGATTCTGATGTTGACTTACAAGTT ACTGTAAGGAGGATCATTGCAGGCAAGTGGCAATTGAATAATGGACAAGCTTGCATTAGTGTTGATTATATCATAACAACAAAAGAGTTTGCCCCAAAGT TGATAGATGCACTAAGGAAAGGGATAGAGGAATTTTTTGGAACAGATCCAATGGAATCAAAAGACATATCCTGTATTGTGAGCTCAAATCATTTTTCACG TTTGGAAAGTCTCATGGATGATTACAAGGTTTTCAACAAAATTGTTGTTGGAGGACAAAGGAATCAGAAGAAATTAAAGATTGCTCCAACAATATTCTTA GATGTTCCTGGAGACTCTCAACTGATGCAGGAAGAGATATTTGGGCCATTGCTTCCTATTATCACTGTTGAAAATGTGAAAGACAGTATTGATCTGATAA ATTCAAAACCAAAGCCTCTTACTGCATATCTCTTCACCAACAATGAGAAGCTAAAGAATAACTTTGTGCAAAGTGTGTCCTCTGGAGGAATGGTCATCAA TGACACTGTGCTGCATGTTACAGTTTCCAGTTTACCCTTTGGAGGAGTTGGGGAGAGTGGAATGGGATCATACCATGGTAAATTTTCTTTTGATGCTTTC AGTCACAAGAAGGCAGTTCTGTACAGAAGTTTCAGTGGAGATGCATCTGTCAGATATCCACCATATACACCAGAAAAGCAGAAGCTAATTAGGGCTGTGA TGAATGGTGGCATATTTGACATAATTCTTGCTTTGATGGGATTCTAG
AA sequence Show only first row Show all	>Potri.001G412900.1 pacid=42788352 polypeptide=Potri.001G412900.1.p locus=Potri.001G412900 ID=Potri.001G412900.1.v4.1 annot-version=v4.1 MRSLCVEPFQNLSVVDTGARRAFTHCSPWKTNHKHEAVLSFPLSSPIRKSLCICLSSSANLPVMMEEKKQTFDANEAAWLVKELNESFRTGKTKSYEWRV SQLKGIEKMVVEREKDISEALYKDLSKPEYEAFVSEIAMVKSSCEEALKELKQWMKPEKAKTSMATYPSSAEIVSEPLGAVLVISTWNYPFSLSVKPVIG AITAGNAVVLKPSEIAPATSSLLSKLFEEYLDRSAVRVLEGGVLETTALLDQKWDKIFYTGSPRVGRIVMTAAAKHLTPVVLELGGKCPAVIDSDVDLQV TVRRIIAGKWQLNNGQACISVDYIITTKEFAPKLIDALRKGIEEFFGTDPMESKDISCIVSSNHFSRLESLMDDYKVFNKIVVGGQRNQKKLKIAPTIFL DVPGDSQLMQEEIFGPLLPIITVENVKDSIDLINSKPKPLTAYLFTNNEKLKNNFVQSVSSGGMVINDTVLHVTVSSLPFGGVGESGMGSYHGKFSFDAF SHKKAVLYRSFSGDASVRYPPYTPEKQKLIRAVMNGGIFDIILALMGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Potri.001G412900 [exp]	0	1
AT5G27560			Domain of unknown function (DU...		Potri.013G020800 [exp]	2.00	0.9600
AT2G21385			unknown protein		Potri.004G160800 [exp]	3.46	0.9522
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Potri.013G053100 [exp]	6.32	0.9608
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Potri.006G157700 [exp]	6.70	0.9416
AT1G76570			Chlorophyll A-B binding family...		Potri.005G258600 [exp]	11.83	0.9514
AT2G27680			NAD(P)-linked oxidoreductase s...		Potri.009G146000 [exp]	12.48	0.9528
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.013G026600 [exp]	15.58	0.9141
AT4G29590			S-adenosyl-L-methionine-depend...		Potri.006G150500 [exp]	20.32	0.9479
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Potri.018G076600 [exp]	21.77	0.9507	Pt-HCF101.1
AT4G12830			alpha/beta-Hydrolases superfam...		Potri.014G175700 [exp]	25.45	0.9441

Compare expression of checked genes

Potri.001G412900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.